Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10177211	0.90[CEU][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10177258	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10203022	0.86[AMR][1000 genomes]
rs10210942	0.88[EUR][1000 genomes]
rs10469656	0.84[EUR][1000 genomes]
rs10932388	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12104775	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12465773	0.88[EUR][1000 genomes]
rs12469375	0.88[JPT][hapmap]
rs12616462	0.86[EUR][1000 genomes]
rs1818751	0.83[YRI][hapmap]
rs1829610	0.90[YRI][hapmap]
rs1829611	0.88[EUR][1000 genomes]
rs1851177	0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs1851178	0.93[CHB][hapmap];0.82[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1851190	0.89[JPT][hapmap]
rs1851196	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1851197	0.98[EUR][1000 genomes]
rs1851198	0.98[EUR][1000 genomes]
rs1851199	0.98[EUR][1000 genomes]
rs1972143	0.88[EUR][1000 genomes]
rs2371306	0.86[ASN][1000 genomes]
rs2371307	0.84[ASN][1000 genomes]
rs4672620	0.80[YRI][hapmap];0.80[EUR][1000 genomes]
rs7349376	0.80[EUR][1000 genomes]
rs7559679	0.89[CEU][hapmap];0.81[JPT][hapmap];0.90[EUR][1000 genomes]
rs7561282	0.82[YRI][hapmap]
rs7580963	0.98[EUR][1000 genomes]
rs7601664	0.87[JPT][hapmap]
rs7602185	0.88[EUR][1000 genomes]
rs9288434	0.88[EUR][1000 genomes]
rs9288435	0.88[EUR][1000 genomes]
rs9288436	0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460069	chr2:212415948-212471642	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv584320	chr2:212415948-212471642	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv584321	chr2:212446818-212511895	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212456600-212473600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:212465400-212469000	Weak transcription	Fetal Heart	heart
3	chr2:212467200-212480000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:212467400-212546800	Weak transcription	Aorta	Aorta

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