Variant report

Variant	rs1860652
Chromosome Location	chr6:57165629-57165630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57164742..57166787-chr6:57167425..57169539,2	K562	blood:
2	chr6:57161309..57164172-chr6:57164400..57166789,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1476852	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1741910	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs1741911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1741912	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1741913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1741915	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1755831	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1755832	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1755834	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1888265	1.00[CEU][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1888266	1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3757295	0.86[EUR][1000 genomes]
rs3778513	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3778514	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3800007	1.00[JPT][hapmap]
rs3800010	1.00[JPT][hapmap]
rs3800014	1.00[JPT][hapmap]
rs3800016	1.00[JPT][hapmap]
rs4715652	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58651731	0.88[AFR][1000 genomes]
rs6459186	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6459188	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6911353	1.00[JPT][hapmap]
rs6915533	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6916106	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6936450	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938582	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9296875	1.00[JPT][hapmap]
rs9396273	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9396274	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9464434	1.00[JPT][hapmap]
rs9464440	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs9475820	0.88[AFR][1000 genomes]
rs9475837	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs9475845	1.00[JPT][hapmap]
rs9475856	1.00[JPT][hapmap]
rs9475861	0.84[GIH][hapmap];1.00[JPT][hapmap]
rs9475882	1.00[JPT][hapmap]
rs9475887	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv522084	chr6:57160035-57165948	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57160800-57166400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:57163800-57166200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:57163800-57166400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:57163800-57168800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:57164000-57167400	Weak transcription	Fetal Kidney	kidney
6	chr6:57164200-57171600	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:57164400-57167200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:57165200-57166200	Weak transcription	Fetal Stomach	stomach
9	chr6:57165200-57166400	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:57165400-57166400	Weak transcription	Fetal Lung	lung
11	chr6:57165400-57169400	Weak transcription	Fetal Muscle Leg	muscle

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