Variant report

Variant	rs9396274
Chromosome Location	chr6:57172209-57172210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57166262..57168451-chr6:57170162..57172445,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12180921	0.89[ASN][1000 genomes]
rs1476852	0.83[EUR][1000 genomes]
rs1741910	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1741911	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1741912	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1741913	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1741915	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1755831	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1755832	0.84[EUR][1000 genomes]
rs1755834	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1860652	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1888265	0.84[EUR][1000 genomes]
rs1888266	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28800513	0.89[ASN][1000 genomes]
rs3757295	0.82[EUR][1000 genomes]
rs3778513	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778514	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800014	0.89[ASN][1000 genomes]
rs4715652	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58482037	0.89[ASN][1000 genomes]
rs58651731	0.89[ASN][1000 genomes]
rs59431929	0.89[ASN][1000 genomes]
rs6459186	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6459188	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6911273	0.89[ASN][1000 genomes]
rs6911353	0.89[ASN][1000 genomes]
rs6915533	0.87[EUR][1000 genomes]
rs6916106	0.87[EUR][1000 genomes]
rs6936450	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9396273	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9464434	0.89[ASN][1000 genomes]
rs9464437	0.89[ASN][1000 genomes]
rs9464438	0.89[ASN][1000 genomes]
rs9475820	0.89[ASN][1000 genomes]
rs9475837	0.89[ASN][1000 genomes]
rs9475840	0.89[ASN][1000 genomes]
rs9475841	0.89[ASN][1000 genomes]
rs9475845	0.89[ASN][1000 genomes]
rs9475847	0.89[ASN][1000 genomes]
rs9475852	0.89[ASN][1000 genomes]
rs9475856	0.89[ASN][1000 genomes]
rs9475863	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57170400-57173400	Enhancers	NHDF-Ad	bronchial
2	chr6:57170400-57178200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:57170800-57172400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:57171000-57175600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:57171200-57177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:57171200-57178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:57171400-57172400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:57171400-57172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:57171400-57177000	Weak transcription	HSMM	muscle
10	chr6:57171400-57177600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:57171400-57178000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr6:57171600-57175200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:57171600-57177200	Weak transcription	NH-A	brain
14	chr6:57171600-57178200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:57172200-57172600	Enhancers	GM12878-XiMat	blood
16	chr6:57172200-57173200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:57172200-57173200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:57172200-57173200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:57172200-57173200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:57172200-57173200	Enhancers	NHLF	lung
21	chr6:57172200-57173400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:57172200-57173600	Enhancers	Osteobl	bone

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