Variant report

Variant	rs1755831
Chromosome Location	chr6:57191377-57191378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57189628..57192491-chr6:57192735..57194263,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12180921	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1476852	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741910	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741911	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741912	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741913	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741915	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755832	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1755834	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17705499	0.80[AFR][1000 genomes]
rs1860652	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1888265	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1888266	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28367021	0.99[AFR][1000 genomes]
rs28800513	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3757295	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3778513	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778514	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800014	1.00[ASN][1000 genomes]
rs4715652	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58482037	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58651731	1.00[ASN][1000 genomes]
rs59431929	1.00[ASN][1000 genomes]
rs6459186	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459188	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911273	1.00[ASN][1000 genomes]
rs6911353	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6915533	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916106	0.93[EUR][1000 genomes]
rs6936450	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938582	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754911	0.99[AFR][1000 genomes]
rs9396273	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396274	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9464433	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9464434	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9464437	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9464438	1.00[ASN][1000 genomes]
rs9464440	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9475820	1.00[ASN][1000 genomes]
rs9475837	1.00[ASN][1000 genomes]
rs9475840	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475841	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475842	0.99[AFR][1000 genomes]
rs9475844	0.99[AFR][1000 genomes]
rs9475845	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475847	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475852	1.00[ASN][1000 genomes]
rs9475856	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475862	0.87[ASN][1000 genomes]
rs9475863	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475887	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57182800-57192600	Weak transcription	Aorta	Aorta
2	chr6:57182800-57194200	Weak transcription	Small Intestine	intestine
3	chr6:57183000-57191400	Weak transcription	Lung	lung
4	chr6:57183000-57192600	Weak transcription	Esophagus	oesophagus
5	chr6:57183000-57194200	Weak transcription	Pancreas	Pancrea
6	chr6:57183000-57194200	Weak transcription	Spleen	Spleen
7	chr6:57183000-57194400	Weak transcription	Brain Substantia Nigra	brain
8	chr6:57183000-57194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
10	chr6:57183200-57191400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:57183200-57191600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:57183200-57191800	Weak transcription	Gastric	stomach
13	chr6:57183200-57192000	Weak transcription	Fetal Brain Male	brain
14	chr6:57183200-57192600	Weak transcription	Colonic Mucosa	Colon
15	chr6:57183200-57192800	Weak transcription	Brain Angular Gyrus	brain
16	chr6:57183200-57194400	Weak transcription	Psoas Muscle	Psoas
17	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:57183400-57191400	Weak transcription	Fetal Lung	lung
19	chr6:57183600-57191800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:57183600-57192200	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:57183800-57192600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:57183800-57192800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:57183800-57193400	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr6:57183800-57194200	Strong transcription	Fetal Thymus	thymus
25	chr6:57184000-57192200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:57184000-57192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:57184000-57193200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:57184000-57194600	Strong transcription	Primary B cells from cord blood	blood
29	chr6:57184000-57195800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:57184200-57192000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:57184200-57192000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:57184200-57194400	Weak transcription	Fetal Heart	heart
33	chr6:57184200-57201200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:57184400-57193600	Strong transcription	Primary T cells from cord blood	blood
35	chr6:57184600-57194400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:57184600-57196000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:57184600-57196200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:57184600-57199200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:57184800-57194400	Strong transcription	HepG2	liver
40	chr6:57184800-57194800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:57184800-57199600	Strong transcription	HSMM	muscle
42	chr6:57185000-57195000	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr6:57185200-57194400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr6:57185200-57195800	Strong transcription	Osteobl	bone
45	chr6:57185800-57192000	Weak transcription	NHEK	skin
46	chr6:57185800-57192200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:57186000-57192400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr6:57186000-57194200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:57186200-57191600	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:57186400-57194000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links