Variant report

Variant	rs9396273
Chromosome Location	chr6:57171452-57171453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57151577..57154543-chr6:57168750..57171657,2	MCF-7	breast:
2	chr6:57166262..57168451-chr6:57170162..57172445,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12180921	1.00[ASN][1000 genomes]
rs1476852	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1741910	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741911	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741912	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741913	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741915	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755831	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755832	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1755834	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1888265	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1888266	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800513	1.00[ASN][1000 genomes]
rs3757295	0.87[EUR][1000 genomes]
rs3778513	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778514	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800014	1.00[ASN][1000 genomes]
rs4715652	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58482037	1.00[ASN][1000 genomes]
rs58651731	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59431929	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60821664	0.88[AFR][1000 genomes]
rs6459186	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459188	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911273	1.00[ASN][1000 genomes]
rs6911353	1.00[ASN][1000 genomes]
rs6915533	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6916106	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6936450	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938582	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9396274	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9464433	0.89[ASN][1000 genomes]
rs9464434	1.00[ASN][1000 genomes]
rs9464437	1.00[ASN][1000 genomes]
rs9464438	1.00[ASN][1000 genomes]
rs9464440	0.87[ASN][1000 genomes]
rs9475820	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475837	1.00[ASN][1000 genomes]
rs9475840	1.00[ASN][1000 genomes]
rs9475841	1.00[ASN][1000 genomes]
rs9475845	1.00[ASN][1000 genomes]
rs9475847	1.00[ASN][1000 genomes]
rs9475852	1.00[ASN][1000 genomes]
rs9475856	1.00[ASN][1000 genomes]
rs9475862	0.87[ASN][1000 genomes]
rs9475863	1.00[ASN][1000 genomes]
rs9475887	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57164200-57171600	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57168200-57171600	Enhancers	Fetal Stomach	stomach
3	chr6:57168400-57171800	Enhancers	NHLF	lung
4	chr6:57168600-57171800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:57169400-57171600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:57170200-57171600	Enhancers	Fetal Muscle Leg	muscle
7	chr6:57170400-57171800	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:57170400-57173400	Enhancers	NHDF-Ad	bronchial
9	chr6:57170400-57178200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:57170600-57171800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:57170600-57171800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:57170800-57172400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:57171000-57175600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:57171200-57172200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:57171200-57177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:57171200-57178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:57171400-57171800	Enhancers	Osteobl	bone
18	chr6:57171400-57172400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:57171400-57172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:57171400-57177000	Weak transcription	HSMM	muscle
21	chr6:57171400-57177600	Weak transcription	Colon Smooth Muscle	Colon
22	chr6:57171400-57178000	Weak transcription	Stomach Smooth Muscle	stomach

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