Variant report

Variant	rs6459188
Chromosome Location	chr6:57169484-57169485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57164742..57166787-chr6:57167425..57169539,2	K562	blood:
2	chr6:57151577..57154543-chr6:57168750..57171657,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12180921	1.00[ASN][1000 genomes]
rs1476852	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1741910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741912	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741915	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755831	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755832	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1755834	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1860652	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1888265	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1888266	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28800513	1.00[ASN][1000 genomes]
rs3757295	0.87[EUR][1000 genomes]
rs3778513	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778514	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800007	1.00[JPT][hapmap]
rs3800010	1.00[JPT][hapmap]
rs3800014	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3800016	1.00[JPT][hapmap]
rs4715652	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58482037	1.00[ASN][1000 genomes]
rs58651731	1.00[ASN][1000 genomes]
rs59431929	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60821664	0.86[AFR][1000 genomes]
rs6459186	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911273	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6911353	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6915533	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6916106	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6936450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938582	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9296875	1.00[JPT][hapmap]
rs9396273	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396274	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9464433	0.89[ASN][1000 genomes]
rs9464434	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9464437	1.00[ASN][1000 genomes]
rs9464438	1.00[ASN][1000 genomes]
rs9464440	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9475820	1.00[ASN][1000 genomes]
rs9475837	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9475840	1.00[ASN][1000 genomes]
rs9475841	1.00[ASN][1000 genomes]
rs9475845	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9475847	1.00[ASN][1000 genomes]
rs9475852	1.00[ASN][1000 genomes]
rs9475856	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9475861	1.00[JPT][hapmap]
rs9475862	0.87[ASN][1000 genomes]
rs9475863	1.00[ASN][1000 genomes]
rs9475882	1.00[JPT][hapmap]
rs9475887	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57164200-57171600	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:57167600-57169600	Weak transcription	Fetal Kidney	kidney
3	chr6:57168000-57170600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:57168200-57169800	Enhancers	NHDF-Ad	bronchial
5	chr6:57168200-57170200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:57168200-57171600	Enhancers	Fetal Stomach	stomach
7	chr6:57168400-57169600	Enhancers	Fetal Muscle Trunk	muscle
8	chr6:57168400-57170200	Enhancers	Ovary	ovary
9	chr6:57168400-57171800	Enhancers	NHLF	lung
10	chr6:57168600-57169800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr6:57168600-57171400	Enhancers	Colon Smooth Muscle	Colon
12	chr6:57168600-57171400	Enhancers	HSMM	muscle
13	chr6:57168600-57171800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:57168800-57170000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:57168800-57170400	Enhancers	Adipose Nuclei	Adipose
16	chr6:57168800-57171000	Enhancers	Osteobl	bone
17	chr6:57168800-57171200	Enhancers	HSMMtube	muscle
18	chr6:57169000-57170800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:57169200-57169800	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr6:57169400-57169600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:57169400-57169600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr6:57169400-57169600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr6:57169400-57169600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:57169400-57170200	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:57169400-57170400	Enhancers	Fetal Lung	lung
26	chr6:57169400-57170600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:57169400-57171600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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