Variant report

Variant	rs1741912
Chromosome Location	chr6:57187030-57187031
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57182975..57187891-chr6:57191602..57197743,6	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12180921	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1476852	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1741910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741911	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741915	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755831	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1755832	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1755834	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17705499	1.00[YRI][hapmap]
rs1860652	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1888265	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1888266	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28367021	0.91[AFR][1000 genomes]
rs28800513	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3757295	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3778513	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778514	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800007	1.00[JPT][hapmap]
rs3800010	1.00[JPT][hapmap]
rs3800014	1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs3800016	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4615395	1.00[YRI][hapmap]
rs4712146	1.00[YRI][hapmap]
rs4715652	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4992408	1.00[YRI][hapmap]
rs58482037	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58651731	1.00[ASN][1000 genomes]
rs59431929	1.00[ASN][1000 genomes]
rs6459186	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6459188	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911273	1.00[ASN][1000 genomes]
rs6911353	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6915533	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6916106	0.93[EUR][1000 genomes]
rs6936450	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6938582	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754911	0.91[AFR][1000 genomes]
rs9296875	1.00[JPT][hapmap]
rs9396273	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396274	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9464433	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9464434	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9464437	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9464438	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9464440	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs9475820	1.00[ASN][1000 genomes]
rs9475837	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9475840	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475841	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475842	0.91[AFR][1000 genomes]
rs9475844	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9475845	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475847	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475852	1.00[ASN][1000 genomes]
rs9475856	1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475861	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9475862	0.87[ASN][1000 genomes]
rs9475863	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9475882	1.00[JPT][hapmap]
rs9475887	1.00[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2758056	chr6:57184541-57562604	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759432	chr6:57184541-57562604	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57182800-57191200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:57182800-57192600	Weak transcription	Aorta	Aorta
3	chr6:57182800-57194200	Weak transcription	Small Intestine	intestine
4	chr6:57183000-57191400	Weak transcription	Lung	lung
5	chr6:57183000-57192600	Weak transcription	Esophagus	oesophagus
6	chr6:57183000-57194200	Weak transcription	Pancreas	Pancrea
7	chr6:57183000-57194200	Weak transcription	Spleen	Spleen
8	chr6:57183000-57194400	Weak transcription	Brain Substantia Nigra	brain
9	chr6:57183000-57194600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:57183000-57199400	Weak transcription	HSMMtube	muscle
11	chr6:57183200-57187200	Weak transcription	Stomach Mucosa	stomach
12	chr6:57183200-57187400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:57183200-57190000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:57183200-57190200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:57183200-57190200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:57183200-57191400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:57183200-57191600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:57183200-57191800	Weak transcription	Gastric	stomach
19	chr6:57183200-57192000	Weak transcription	Fetal Brain Male	brain
20	chr6:57183200-57192600	Weak transcription	Colonic Mucosa	Colon
21	chr6:57183200-57192800	Weak transcription	Brain Angular Gyrus	brain
22	chr6:57183200-57194400	Weak transcription	Psoas Muscle	Psoas
23	chr6:57183200-57199200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:57183400-57190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:57183400-57190800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:57183400-57191400	Weak transcription	Fetal Lung	lung
27	chr6:57183600-57191800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:57183600-57192200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr6:57183800-57187400	Strong transcription	Placenta	Placenta
30	chr6:57183800-57187800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr6:57183800-57192600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:57183800-57192800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:57183800-57193400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr6:57183800-57194200	Strong transcription	Fetal Thymus	thymus
35	chr6:57184000-57187800	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:57184000-57188400	Strong transcription	Fetal Muscle Leg	muscle
37	chr6:57184000-57188600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr6:57184000-57189200	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr6:57184000-57189400	Strong transcription	Primary hematopoietic stem cells	blood
40	chr6:57184000-57192200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:57184000-57192200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:57184000-57193200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:57184000-57194600	Strong transcription	Primary B cells from cord blood	blood
44	chr6:57184000-57195800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:57184200-57187200	Strong transcription	A549	lung
46	chr6:57184200-57187800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr6:57184200-57188000	Strong transcription	Left Ventricle	heart
48	chr6:57184200-57189000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:57184200-57192000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr6:57184200-57192000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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