Variant report

Variant	rs1883962
Chromosome Location	chr11:34209981-34209982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:34209790-34210030	H1-hESC	embryonic stem cell:	n/a	n/a
2	TEAD4	chr11:34209709-34210137	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr11:34209758-34210112	H1-hESC	embryonic stem cell:	n/a	n/a
4	YY1	chr11:34209611-34210100	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34209674..34212372-chr11:34378433..34380265,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201867	TF binding region
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2467377	0.96[ASN][1000 genomes]
rs2473901	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2473904	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473909	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473910	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2473912	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473913	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs910255	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666645	0.85[ASN][1000 genomes]
rs967457	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511473	chr11:34202953-34212883	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196600-34210200	Weak transcription	HepG2	liver
2	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
3	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
6	chr11:34204400-34212000	Weak transcription	GM12878-XiMat	blood
7	chr11:34206000-34211200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:34206200-34214000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:34206400-34214200	Weak transcription	Ovary	ovary
10	chr11:34206800-34210200	Weak transcription	Fetal Kidney	kidney
11	chr11:34206800-34210600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:34206800-34210600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:34207000-34210200	Weak transcription	Liver	Liver
14	chr11:34207000-34210800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:34207200-34210800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:34207200-34226000	Weak transcription	Gastric	stomach
18	chr11:34207400-34210800	Enhancers	Fetal Lung	lung
19	chr11:34207800-34210600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:34208200-34213200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:34208200-34213600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:34208200-34213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
24	chr11:34208400-34210600	Enhancers	Fetal Thymus	thymus
25	chr11:34208400-34213000	Weak transcription	HSMMtube	muscle
26	chr11:34208400-34213200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:34208400-34213200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:34208400-34213400	Weak transcription	Brain Angular Gyrus	brain
29	chr11:34208400-34213600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:34208400-34213600	Weak transcription	HMEC	breast
31	chr11:34208400-34213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr11:34208400-34214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
34	chr11:34208600-34210000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:34208600-34210000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr11:34208600-34210400	Weak transcription	NH-A	brain
37	chr11:34208600-34210600	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr11:34208600-34210800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:34208600-34212000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr11:34208600-34213200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr11:34208600-34213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:34208600-34213400	Weak transcription	Brain Anterior Caudate	brain
43	chr11:34208600-34213400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr11:34208600-34213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:34208600-34213400	Weak transcription	HSMM	muscle
46	chr11:34208600-34213600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:34208600-34214000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:34208600-34214800	Weak transcription	Right Atrium	heart
49	chr11:34208800-34210000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:34208800-34210000	Weak transcription	Brain Germinal Matrix	brain

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