Variant report

Variant	rs2473904
Chromosome Location	chr11:34215606-34215607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34214382..34216141-chr11:34216266..34217822,2	MCF-7	breast:
2	chr11:34213210..34216201-chr11:34233621..34235955,2	MCF-7	breast:
3	chr11:34213006..34215990-chr11:34223234..34225246,2	K562	blood:
4	chr11:34214181..34215695-chr11:34230468..34232938,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1883962	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467377	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[ASN][1000 genomes]
rs2473901	0.96[ASN][1000 genomes]
rs2473909	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473910	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2473912	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473913	0.96[ASN][1000 genomes]
rs910255	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666645	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs967457	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
3	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr11:34207200-34226000	Weak transcription	Gastric	stomach
5	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
6	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
7	chr11:34210600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:34210600-34224800	Weak transcription	Primary T cells from cord blood	blood
9	chr11:34210600-34226600	Weak transcription	Pancreas	Pancrea
10	chr11:34211200-34217000	Weak transcription	Liver	Liver
11	chr11:34212000-34216800	Enhancers	Placenta	Placenta
12	chr11:34213000-34216000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:34213200-34215800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:34213200-34215800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:34213200-34216000	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:34213200-34216400	Enhancers	Fetal Muscle Leg	muscle
17	chr11:34213400-34216000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:34213400-34216200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:34213400-34216200	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:34213600-34216200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:34213600-34216600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:34213800-34215800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr11:34213800-34216000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:34213800-34216200	Enhancers	Brain Germinal Matrix	brain
25	chr11:34213800-34216200	Enhancers	Right Ventricle	heart
26	chr11:34214000-34215800	Enhancers	A549	lung
27	chr11:34214000-34216200	Strong transcription	HepG2	liver
28	chr11:34214000-34216400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:34214000-34216400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:34214000-34217000	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:34214000-34217200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr11:34214000-34224400	Weak transcription	GM12878-XiMat	blood
33	chr11:34214200-34215800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:34214200-34215800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:34214200-34216000	Enhancers	Hela-S3	cervix
36	chr11:34214200-34217200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:34214400-34215800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:34214400-34216200	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:34214600-34217000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:34214600-34217200	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr11:34214600-34228000	Weak transcription	Brain Angular Gyrus	brain
42	chr11:34214800-34215800	Enhancers	NHDF-Ad	bronchial
43	chr11:34214800-34216800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:34214800-34217200	Enhancers	NH-A	brain
45	chr11:34214800-34225200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:34215000-34215800	Enhancers	NHLF	lung
47	chr11:34215000-34216000	Enhancers	HSMM	muscle
48	chr11:34215000-34216200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:34215000-34216200	Enhancers	Stomach Smooth Muscle	stomach
50	chr11:34215000-34217000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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