Variant report

Variant	rs9666645
Chromosome Location	chr11:34212883-34212884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34211972..34213946-chr11:34215834..34218805,2	K562	blood:
2	chr11:34211397..34213472-chr11:34217305..34219861,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1883962	0.85[ASN][1000 genomes]
rs2467377	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs2473901	0.81[ASN][1000 genomes]
rs2473904	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2473909	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2473910	0.81[ASN][1000 genomes]
rs2473912	0.85[ASN][1000 genomes]
rs2473913	0.81[ASN][1000 genomes]
rs910255	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511473	chr11:34202953-34212883	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
2	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
5	chr11:34206200-34214000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:34206400-34214200	Weak transcription	Ovary	ovary
7	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:34207200-34226000	Weak transcription	Gastric	stomach
9	chr11:34208200-34213200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:34208200-34213600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:34208200-34213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
13	chr11:34208400-34213000	Weak transcription	HSMMtube	muscle
14	chr11:34208400-34213200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:34208400-34213200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:34208400-34213400	Weak transcription	Brain Angular Gyrus	brain
17	chr11:34208400-34213600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:34208400-34213600	Weak transcription	HMEC	breast
19	chr11:34208400-34213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:34208400-34214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
22	chr11:34208600-34213200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:34208600-34213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:34208600-34213400	Weak transcription	Brain Anterior Caudate	brain
25	chr11:34208600-34213400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr11:34208600-34213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:34208600-34213400	Weak transcription	HSMM	muscle
28	chr11:34208600-34213600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:34208600-34214000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:34208600-34214800	Weak transcription	Right Atrium	heart
31	chr11:34208800-34213400	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:34208800-34213800	Weak transcription	Right Ventricle	heart
33	chr11:34209000-34213400	Weak transcription	Fetal Muscle Trunk	muscle
34	chr11:34209000-34213600	Weak transcription	Fetal Stomach	stomach
35	chr11:34210200-34214200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:34210400-34213200	Weak transcription	Fetal Muscle Leg	muscle
37	chr11:34210600-34213000	Weak transcription	Brain Substantia Nigra	brain
38	chr11:34210600-34213800	Weak transcription	Brain Germinal Matrix	brain
39	chr11:34210600-34214000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr11:34210600-34214000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr11:34210600-34214000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:34210600-34214000	Weak transcription	A549	lung
43	chr11:34210600-34214200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr11:34210600-34214600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr11:34210600-34215600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr11:34210600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:34210600-34224800	Weak transcription	Primary T cells from cord blood	blood
48	chr11:34210600-34226600	Weak transcription	Pancreas	Pancrea
49	chr11:34210800-34213200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:34210800-34213200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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