Variant report

Variant	rs2473909
Chromosome Location	chr11:34213286-34213287
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34213210..34216201-chr11:34233621..34235955,2	MCF-7	breast:
2	chr11:34213263..34215421-chr11:34226827..34229428,2	MCF-7	breast:
3	chr11:34211972..34213946-chr11:34215834..34218805,2	K562	blood:
4	chr11:34213006..34215990-chr11:34223234..34225246,2	K562	blood:
5	chr11:34211397..34213472-chr11:34217305..34219861,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1883962	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467377	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs2473901	1.00[CHB][hapmap];0.96[ASN][1000 genomes]
rs2473904	1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473910	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2473912	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473913	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs910255	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666645	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs967457	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
2	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
5	chr11:34206200-34214000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:34206400-34214200	Weak transcription	Ovary	ovary
7	chr11:34207000-34218000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:34207200-34226000	Weak transcription	Gastric	stomach
9	chr11:34208200-34213600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:34208200-34213800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:34208200-34235200	Weak transcription	Adipose Nuclei	Adipose
12	chr11:34208400-34213400	Weak transcription	Brain Angular Gyrus	brain
13	chr11:34208400-34213600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:34208400-34213600	Weak transcription	HMEC	breast
15	chr11:34208400-34213800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:34208400-34214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:34208400-34217200	Weak transcription	Left Ventricle	heart
18	chr11:34208600-34213400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:34208600-34213400	Weak transcription	Brain Anterior Caudate	brain
20	chr11:34208600-34213400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:34208600-34213400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:34208600-34213400	Weak transcription	HSMM	muscle
23	chr11:34208600-34213600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:34208600-34214000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:34208600-34214800	Weak transcription	Right Atrium	heart
26	chr11:34208800-34213400	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:34208800-34213800	Weak transcription	Right Ventricle	heart
28	chr11:34209000-34213400	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:34209000-34213600	Weak transcription	Fetal Stomach	stomach
30	chr11:34210200-34214200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:34210600-34213800	Weak transcription	Brain Germinal Matrix	brain
32	chr11:34210600-34214000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:34210600-34214000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:34210600-34214000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:34210600-34214000	Weak transcription	A549	lung
36	chr11:34210600-34214200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:34210600-34214600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr11:34210600-34215600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:34210600-34216000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:34210600-34224800	Weak transcription	Primary T cells from cord blood	blood
41	chr11:34210600-34226600	Weak transcription	Pancreas	Pancrea
42	chr11:34210800-34214000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:34210800-34214000	Weak transcription	Fetal Lung	lung
44	chr11:34210800-34214200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:34210800-34214600	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:34211000-34214000	Weak transcription	Fetal Brain Female	brain
47	chr11:34211000-34214600	Weak transcription	Fetal Intestine Small	intestine
48	chr11:34211200-34213400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr11:34211200-34215400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:34211200-34217000	Weak transcription	Liver	Liver

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