Variant report

Variant	rs910255
Chromosome Location	chr11:34207445-34207446
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34199620..34202889-chr11:34205068..34208989,4	K562	blood:
2	chr11:34206532..34209064-chr11:34210711..34213198,2	K562	blood:

Variant related genes	Relation type
ENSG00000201867	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1883962	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467377	0.96[ASN][1000 genomes]
rs2473901	0.96[ASN][1000 genomes]
rs2473904	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473909	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473910	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2473912	0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2473913	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9666645	0.85[ASN][1000 genomes]
rs967457	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511473	chr11:34202953-34212883	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34196200-34207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:34196400-34207600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:34196600-34207600	Weak transcription	Left Ventricle	heart
4	chr11:34196600-34210200	Weak transcription	HepG2	liver
5	chr11:34196600-34214000	Weak transcription	Stomach Mucosa	stomach
6	chr11:34199200-34209800	Weak transcription	A549	lung
7	chr11:34202400-34214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:34203000-34224800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:34203400-34207600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:34203400-34228200	Weak transcription	Psoas Muscle	Psoas
11	chr11:34203600-34207800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:34203800-34207600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:34203800-34207600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:34203800-34207600	Weak transcription	Right Atrium	heart
15	chr11:34204000-34207600	Weak transcription	Adipose Nuclei	Adipose
16	chr11:34204000-34207600	Weak transcription	Brain Substantia Nigra	brain
17	chr11:34204000-34208000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr11:34204200-34207600	Weak transcription	Right Ventricle	heart
19	chr11:34204400-34212000	Weak transcription	GM12878-XiMat	blood
20	chr11:34204800-34207800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:34204800-34209000	Enhancers	Fetal Stomach	stomach
22	chr11:34205200-34209000	Enhancers	Fetal Muscle Leg	muscle
23	chr11:34205400-34207800	Weak transcription	HSMM	muscle
24	chr11:34205800-34208600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:34206000-34207600	Enhancers	Brain Germinal Matrix	brain
26	chr11:34206000-34207800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:34206000-34208800	Enhancers	Brain Hippocampus Middle	brain
28	chr11:34206000-34211200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr11:34206200-34207600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:34206200-34207600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:34206200-34207600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:34206200-34207800	Enhancers	Fetal Thymus	thymus
33	chr11:34206200-34214000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:34206400-34207600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr11:34206400-34209800	Weak transcription	Pancreas	Pancrea
36	chr11:34206400-34214200	Weak transcription	Ovary	ovary
37	chr11:34206600-34207800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:34206600-34207800	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:34206600-34208000	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:34206600-34208800	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr11:34206600-34209200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:34206800-34207600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:34206800-34208600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr11:34206800-34209000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:34206800-34210200	Weak transcription	Fetal Kidney	kidney
46	chr11:34206800-34210600	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:34206800-34210600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:34207000-34207600	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr11:34207000-34208400	Enhancers	NHEK	skin
50	chr11:34207000-34208800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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