Variant report

Variant	rs1911615
Chromosome Location	chr15:49953113-49953114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10220770	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10220846	1.00[EUR][1000 genomes]
rs10519234	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10519235	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10519238	1.00[EUR][1000 genomes]
rs1055135	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11539519	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13313447	1.00[EUR][1000 genomes]
rs16962663	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962664	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962666	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962668	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962670	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962676	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962680	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962697	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16962735	1.00[EUR][1000 genomes]
rs1911618	1.00[EUR][1000 genomes]
rs58889385	1.00[EUR][1000 genomes]
rs59565793	1.00[EUR][1000 genomes]
rs59749619	1.00[EUR][1000 genomes]
rs59942223	1.00[EUR][1000 genomes]
rs60640257	1.00[EUR][1000 genomes]
rs7171994	0.87[EUR][1000 genomes]
rs7175199	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7175805	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7176887	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73391021	1.00[EUR][1000 genomes]
rs73391038	1.00[EUR][1000 genomes]
rs73391046	1.00[EUR][1000 genomes]
rs73406025	1.00[EUR][1000 genomes]
rs73406046	1.00[EUR][1000 genomes]
rs73406051	1.00[EUR][1000 genomes]
rs73406052	1.00[EUR][1000 genomes]
rs73406056	1.00[EUR][1000 genomes]
rs73406060	1.00[EUR][1000 genomes]
rs73406069	1.00[EUR][1000 genomes]
rs73406085	1.00[EUR][1000 genomes]
rs73406091	1.00[EUR][1000 genomes]
rs73406098	1.00[EUR][1000 genomes]
rs73406100	1.00[EUR][1000 genomes]
rs73407903	1.00[EUR][1000 genomes]
rs73407904	1.00[EUR][1000 genomes]
rs73407908	1.00[EUR][1000 genomes]
rs74012439	1.00[EUR][1000 genomes]
rs74012441	1.00[EUR][1000 genomes]
rs8039808	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8041629	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8041771	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9652425	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49952600-49953200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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