Variant report

Variant	rs60640257
Chromosome Location	chr15:49979513-49979514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10220770	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220846	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519234	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519235	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519238	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1055135	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11539519	1.00[EUR][1000 genomes]
rs13313447	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962663	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962664	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962666	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962668	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962670	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962676	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962680	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962697	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962735	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911615	1.00[EUR][1000 genomes]
rs1911617	0.83[AFR][1000 genomes]
rs1911618	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2202711	0.81[AFR][1000 genomes]
rs58889385	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59112029	0.90[AMR][1000 genomes]
rs59565793	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749619	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942223	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171994	0.87[EUR][1000 genomes]
rs7175199	1.00[EUR][1000 genomes]
rs7175805	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176887	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs731052	0.83[AFR][1000 genomes]
rs73391021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391046	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406025	1.00[EUR][1000 genomes]
rs73406036	0.80[AMR][1000 genomes]
rs73406046	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406051	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406052	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406056	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406060	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406069	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406085	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406091	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406098	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406100	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407903	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407904	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407908	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012439	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012441	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039808	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041629	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041771	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs906420	0.81[AFR][1000 genomes]
rs9652425	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49966800-49987400	Weak transcription	NHLF	lung
2	chr15:49978400-49984200	Weak transcription	NHDF-Ad	bronchial
3	chr15:49978800-49979600	Enhancers	Hela-S3	cervix
4	chr15:49979400-49979600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:49979400-49980400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:49979400-49984200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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