Variant report

Variant	rs10519235
Chromosome Location	chr15:49946372-49946373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49939950..49944441-chr15:49944621..49947997,7	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTWD1-1	chr15:49944336-49946643	NONHSAT042388
2	lnc-DTWD1-1	chr15:49944336-49948429	ENSG00000261597.1

Variant related genes	Relation type
ENSG00000261597	Chromatin interaction

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10220770	1.00[CEU][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220846	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519234	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519238	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1055135	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11539519	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12324090	0.87[AFR][1000 genomes]
rs12592839	0.84[AFR][1000 genomes]
rs12594926	0.85[AFR][1000 genomes]
rs13313447	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962663	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962664	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962666	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962668	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962670	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962676	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962680	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962690	1.00[GIH][hapmap]
rs16962697	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962735	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911615	1.00[EUR][1000 genomes]
rs1911617	0.93[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1911618	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2202711	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs34212162	0.85[AFR][1000 genomes]
rs55691379	0.85[AFR][1000 genomes]
rs56053668	0.85[AFR][1000 genomes]
rs58889385	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59112029	0.81[AMR][1000 genomes]
rs59565793	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749619	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942223	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60640257	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171994	0.87[EUR][1000 genomes]
rs7175199	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7175805	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176306	0.80[YRI][hapmap]
rs7176887	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs731052	0.93[ASW][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs73391021	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391038	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391046	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406025	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406036	0.91[AMR][1000 genomes]
rs73406046	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406051	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406052	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406056	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406060	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406069	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406085	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406091	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406100	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407903	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407904	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407908	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012441	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8025420	0.83[AFR][1000 genomes]
rs8027730	0.83[YRI][hapmap]
rs8028721	0.81[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs8029303	0.85[AFR][1000 genomes]
rs8030269	0.85[AFR][1000 genomes]
rs8030707	0.81[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap]
rs8033054	1.00[GIH][hapmap]
rs8039808	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041629	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041771	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs906420	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9652425	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9972602	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49943600-49946600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr15:49944400-49946600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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