Variant report

Variant	rs16962735
Chromosome Location	chr15:49965620-49965621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49962247..49964290-chr15:49965595..49967468,2	K562	blood:
2	chr15:49958418..49961661-chr15:49962347..49965829,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10220770	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220846	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519234	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519235	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519238	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1055135	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11539519	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12324090	0.81[AFR][1000 genomes]
rs13313447	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962663	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962664	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962666	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962668	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962670	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962676	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962680	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962697	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911615	1.00[EUR][1000 genomes]
rs1911617	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1911618	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2202711	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs34212162	0.83[AFR][1000 genomes]
rs58889385	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59112029	0.90[AMR][1000 genomes]
rs59565793	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749619	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942223	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60640257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171994	0.87[EUR][1000 genomes]
rs7175199	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7175805	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176306	0.80[YRI][hapmap]
rs7176887	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs731052	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs73391021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391046	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406025	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73406036	0.80[AMR][1000 genomes]
rs73406046	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406051	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406052	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406056	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406060	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406069	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406085	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406091	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406098	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406100	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407903	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407904	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407908	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012439	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012441	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8027730	0.85[YRI][hapmap]
rs8028721	0.91[YRI][hapmap]
rs8030707	0.91[YRI][hapmap]
rs8039808	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041629	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041771	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs906420	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9652425	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49961800-49966800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:49962000-49966600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:49962200-49965800	Weak transcription	Osteobl	bone
4	chr15:49962400-49966600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:49962400-49966800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr15:49962800-49966800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:49963200-49967000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:49965400-49968400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:49965600-49966600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:49965600-49967000	Enhancers	A549	lung
11	chr15:49965600-49967200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:49965600-49968000	Enhancers	Hela-S3	cervix
13	chr15:49965600-49968200	Enhancers	HMEC	breast
14	chr15:49965600-49968600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links