Variant report

Variant	rs7171994
Chromosome Location	chr15:50004195-50004196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50003699..50006468-chr15:50008293..50011048,2	MCF-7	breast:
2	chr15:50002798..50005216-chr15:50011124..50013123,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10220770	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10220846	0.87[EUR][1000 genomes]
rs10519234	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10519235	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10519238	0.87[EUR][1000 genomes]
rs1055135	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11539519	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13313447	0.87[EUR][1000 genomes]
rs16962663	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962664	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962666	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962668	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962670	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962676	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962680	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962697	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16962735	0.87[EUR][1000 genomes]
rs1911615	0.87[EUR][1000 genomes]
rs1911618	0.87[EUR][1000 genomes]
rs58889385	0.87[EUR][1000 genomes]
rs59565793	0.87[EUR][1000 genomes]
rs59749619	0.87[EUR][1000 genomes]
rs59942223	0.87[EUR][1000 genomes]
rs60640257	0.87[EUR][1000 genomes]
rs7175199	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7175805	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7176887	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs73391021	0.87[EUR][1000 genomes]
rs73391038	0.87[EUR][1000 genomes]
rs73391046	0.87[EUR][1000 genomes]
rs73406025	0.87[EUR][1000 genomes]
rs73406046	0.87[EUR][1000 genomes]
rs73406051	0.87[EUR][1000 genomes]
rs73406052	0.87[EUR][1000 genomes]
rs73406056	0.87[EUR][1000 genomes]
rs73406060	0.87[EUR][1000 genomes]
rs73406069	0.87[EUR][1000 genomes]
rs73406085	0.87[EUR][1000 genomes]
rs73406091	0.87[EUR][1000 genomes]
rs73406098	0.87[EUR][1000 genomes]
rs73406100	0.87[EUR][1000 genomes]
rs73407903	0.87[EUR][1000 genomes]
rs73407904	0.87[EUR][1000 genomes]
rs73407908	0.87[EUR][1000 genomes]
rs74012439	0.87[EUR][1000 genomes]
rs74012441	0.87[EUR][1000 genomes]
rs8039808	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs8041629	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs8041771	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9652425	1.00[CEU][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv569393	chr15:49977687-50012256	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50003200-50004200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr15:50003800-50010400	Weak transcription	Aorta	Aorta
3	chr15:50004000-50004400	Weak transcription	Primary monocytes fromperipheralblood	blood

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