Variant report

Variant	rs73407908
Chromosome Location	chr15:49949559-49949560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49947802..49950738-chr15:49954326..49956020,3	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10220770	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220846	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519234	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519235	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10519238	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1055135	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11539519	1.00[EUR][1000 genomes]
rs13313447	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962663	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962664	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962666	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962668	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962670	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962676	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962680	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962697	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16962735	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1911615	1.00[EUR][1000 genomes]
rs1911618	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58889385	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59112029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59565793	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59749619	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59942223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60640257	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171994	0.87[EUR][1000 genomes]
rs7175199	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7175805	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7176887	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391021	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391038	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73391046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406025	1.00[EUR][1000 genomes]
rs73406036	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73406046	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406051	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406052	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406056	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406060	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406069	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406085	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406091	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406098	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406100	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407903	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012439	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74012441	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039808	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041629	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8041771	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9652425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431388	chr15:49835663-49997483	Flanking Active TSS Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49949000-49949600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:49949000-49949800	Enhancers	Ovary	ovary

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