The 2.0 version of rSNPBase

Variant report

Variant rs1924661
Chromosome Location chr13:49843964-49843965
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:94 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:49823000-49844200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr13:49823400-49844000 Weak transcription A549 lung
3 chr13:49823800-49855400 Weak transcription Small Intestine intestine
4 chr13:49826600-49877800 Weak transcription Psoas Muscle Psoas
5 chr13:49831200-49845200 Weak transcription NH-A brain
6 chr13:49832800-49844800 Strong transcription Dnd41 blood
7 chr13:49832800-49860600 Weak transcription Primary T killer memory cells from peripheral blood blood
8 chr13:49832800-49862800 Weak transcription Primary T killer naive cells fromperipheralblood blood
9 chr13:49833000-49865600 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr13:49833200-49852600 Weak transcription Primary T helper cells PMA-I stimulated --
11 chr13:49833200-49863800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr13:49833200-49866600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr13:49834000-49846400 Weak transcription Pancreas Pancrea
14 chr13:49834200-49855600 Weak transcription Fetal Intestine Small intestine
15 chr13:49834200-49875200 Weak transcription Gastric stomach
16 chr13:49834600-49845600 Weak transcription Fetal Kidney kidney
17 chr13:49834600-49867000 Weak transcription Thymus Thymus
18 chr13:49834800-49853200 Weak transcription Rectal Smooth Muscle rectum
19 chr13:49834800-49873000 Weak transcription HMEC breast
20 chr13:49834800-49875400 Weak transcription Esophagus oesophagus
21 chr13:49835200-49846800 Weak transcription HepG2 liver
22 chr13:49835400-49862200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr13:49835600-49846600 Weak transcription Brain Cingulate Gyrus brain
24 chr13:49835600-49846800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr13:49835600-49866800 Weak transcription Brain Angular Gyrus brain
26 chr13:49835600-49866800 Weak transcription Brain Germinal Matrix brain
27 chr13:49835600-49867000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr13:49835600-49867000 Weak transcription Fetal Brain Male brain
29 chr13:49835800-49845600 Weak transcription Fetal Heart heart
30 chr13:49835800-49853000 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr13:49835800-49863600 Weak transcription Right Ventricle heart
32 chr13:49835800-49875200 Weak transcription Primary B cells from peripheral blood blood
33 chr13:49835800-49875200 Weak transcription GM12878-XiMat blood
34 chr13:49836000-49851800 Weak transcription Placenta Placenta
35 chr13:49836000-49866800 Weak transcription Colon Smooth Muscle Colon
36 chr13:49836200-49856600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr13:49836200-49866800 Weak transcription Brain Substantia Nigra brain
38 chr13:49836600-49866800 Weak transcription Brain Anterior Caudate brain
39 chr13:49836600-49867000 Weak transcription Primary B cells from cord blood blood
40 chr13:49836600-49867000 Weak transcription Brain Inferior Temporal Lobe brain
41 chr13:49837000-49844200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr13:49837000-49852800 Weak transcription Ovary ovary
43 chr13:49837600-49858800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr13:49837800-49854600 Weak transcription Primary T regulatory cells fromperipheralblood blood
45 chr13:49837800-49866600 Weak transcription Fetal Lung lung
46 chr13:49838200-49845400 Weak transcription NHDF-Ad bronchial
47 chr13:49838400-49853000 Weak transcription iPS-18 Cell Line embryonic stem cell
48 chr13:49838600-49875400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr13:49839400-49844600 Strong transcription Skeletal Muscle Female skeletal muscle
50 chr13:49840000-49844600 Strong transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015