Variant report

Variant	rs1952203
Chromosome Location	chr14:70364880-70364881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129698	1.00[EUR][1000 genomes]
rs10130124	1.00[EUR][1000 genomes]
rs10137162	1.00[EUR][1000 genomes]
rs10144038	1.00[EUR][1000 genomes]
rs10146486	1.00[EUR][1000 genomes]
rs10150925	1.00[EUR][1000 genomes]
rs12164873	1.00[EUR][1000 genomes]
rs1275842	1.00[ASN][1000 genomes]
rs1275843	1.00[ASN][1000 genomes]
rs1275845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1275846	1.00[ASN][1000 genomes]
rs1275848	1.00[ASN][1000 genomes]
rs1290043	1.00[ASN][1000 genomes]
rs1295832	1.00[ASN][1000 genomes]
rs1296571	1.00[ASN][1000 genomes]
rs1299968	1.00[ASN][1000 genomes]
rs2766463	1.00[ASN][1000 genomes]
rs28435330	1.00[EUR][1000 genomes]
rs28445972	1.00[EUR][1000 genomes]
rs28505725	1.00[EUR][1000 genomes]
rs28524787	1.00[EUR][1000 genomes]
rs28633309	1.00[EUR][1000 genomes]
rs28757382	1.00[EUR][1000 genomes]
rs28879830	1.00[EUR][1000 genomes]
rs4899320	1.00[ASN][1000 genomes]
rs7154537	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70358400-70369400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:70360000-70366000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:70362200-70365000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr14:70364000-70365400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:70364000-70365600	Weak transcription	Hela-S3	cervix
6	chr14:70364000-70370600	Weak transcription	HepG2	liver
7	chr14:70364000-70387600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:70364200-70365000	Weak transcription	Liver	Liver
9	chr14:70364200-70367800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:70364600-70367400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:70364800-70365400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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