The 2.0 version of rSNPBase

Variant report

Variant rs1962480
Chromosome Location chr1:150416220-150416221
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:150340000-150416800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
2 chr1:150362600-150416600 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr1:150373200-150442800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:150380600-150429800 Weak transcription Aorta Aorta
5 chr1:150381800-150417400 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr1:150382000-150418200 Weak transcription Colonic Mucosa Colon
7 chr1:150382000-150432400 Weak transcription Fetal Brain Male brain
8 chr1:150383000-150416600 Weak transcription Muscle Satellite Cultured Cells --
9 chr1:150383400-150419000 Weak transcription Fetal Kidney kidney
10 chr1:150383400-150419000 Weak transcription Gastric stomach
11 chr1:150383400-150432200 Weak transcription Right Ventricle heart
12 chr1:150383400-150443200 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:150383600-150416800 Weak transcription Brain Inferior Temporal Lobe brain
14 chr1:150383600-150418200 Weak transcription Pancreas Pancrea
15 chr1:150386800-150429800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:150388600-150416600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
17 chr1:150388600-150416600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr1:150388600-150416800 Weak transcription Primary T killer memory cells from peripheral blood blood
19 chr1:150389400-150423400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:150389600-150417000 Weak transcription HMEC breast
21 chr1:150390000-150429600 Weak transcription A549 lung
22 chr1:150390200-150416400 Weak transcription Colon Smooth Muscle Colon
23 chr1:150391600-150416800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:150391800-150416800 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr1:150392600-150418400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:150393200-150418200 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr1:150393400-150429800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:150393600-150416400 Weak transcription Cortex derived primary cultured neurospheres brain
29 chr1:150393600-150418800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr1:150393600-150420600 Weak transcription Brain Angular Gyrus brain
31 chr1:150393600-150429800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr1:150393800-150429800 Weak transcription NHEK skin
33 chr1:150395800-150419000 Weak transcription Spleen Spleen
34 chr1:150397000-150419000 Weak transcription Esophagus oesophagus
35 chr1:150401400-150448200 Weak transcription ES-WA7 Cell Line embryonic stem cell
36 chr1:150405200-150422400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:150405400-150418400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:150406800-150418800 Weak transcription HSMMtube muscle
39 chr1:150407800-150418600 Weak transcription Placenta Amnion Placenta Amnion
40 chr1:150408400-150416600 Weak transcription HepG2 liver
41 chr1:150408400-150425000 Strong transcription Primary T regulatory cells fromperipheralblood blood
42 chr1:150409600-150427200 Weak transcription Small Intestine intestine
43 chr1:150409800-150437000 Strong transcription Fetal Thymus thymus
44 chr1:150410000-150429800 Weak transcription H9 Cell Line embryonic stem cell
45 chr1:150410800-150434400 Strong transcription Monocytes-CD14+_RO01746 blood
46 chr1:150411000-150429800 Weak transcription HUVEC blood vessel
47 chr1:150411200-150446400 Strong transcription Dnd41 blood
48 chr1:150411600-150422800 Strong transcription iPS-20b Cell Line embryonic stem cell
49 chr1:150412000-150443000 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr1:150412600-150428200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived

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Last update: Aug 31, 2015