Variant report
| Variant | rs196749 |
|---|---|
| Chromosome Location | chr7:14479112-14479113 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10239634 | 0.82[AMR][1000 genomes] |
| rs10242478 | 0.82[AMR][1000 genomes] |
| rs10267135 | 0.82[AMR][1000 genomes] |
| rs10950523 | 0.88[JPT][hapmap] |
| rs10950524 | 0.82[AMR][1000 genomes] |
| rs11761226 | 0.86[JPT][hapmap] |
| rs12666188 | 0.82[AMR][1000 genomes] |
| rs12668508 | 0.82[AMR][1000 genomes] |
| rs171927 | 0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs196747 | 0.82[AMR][1000 genomes] |
| rs196748 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs196752 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs196754 | 1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs196759 | 0.82[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs196763 | 0.84[AMR][1000 genomes] |
| rs2060159 | 0.86[JPT][hapmap];1.00[EUR][1000 genomes] |
| rs6461095 | 0.88[JPT][hapmap] |
| rs6461098 | 0.88[JPT][hapmap] |
| rs6971925 | 0.85[JPT][hapmap] |
| rs73282311 | 0.82[AMR][1000 genomes] |
| rs73282318 | 0.82[AMR][1000 genomes] |
| rs73282321 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14473200-14479800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr7:14478800-14479200 | Enhancers | Fetal Lung | lung |
