Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10239634	0.94[AMR][1000 genomes]
rs10242478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10267135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10950524	1.00[AMR][1000 genomes]
rs12666188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12668508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs171927	0.94[AMR][1000 genomes]
rs196747	1.00[AMR][1000 genomes]
rs196749	0.82[AMR][1000 genomes]
rs196752	0.84[AMR][1000 genomes]
rs196754	0.94[AMR][1000 genomes]
rs196759	0.94[AMR][1000 genomes]
rs196763	0.97[AMR][1000 genomes]
rs2060161	0.81[AMR][1000 genomes]
rs4721340	0.98[ASN][1000 genomes]
rs73282311	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73285809	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7782300	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs969596	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv915603	chr7:14443884-14624268	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1848567	chr7:14464118-14579801	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv887707	chr7:14471682-14576163	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv887708	chr7:14494508-14617982	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800100	chr7:14511454-14564068	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14520200-14527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:14520400-14542400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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