Variant report

Variant	rs969596
Chromosome Location	chr7:14428374-14428375
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10239634	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242478	0.81[AMR][1000 genomes]
rs10258060	1.00[YRI][hapmap]
rs10267135	0.81[AMR][1000 genomes]
rs10950524	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12666188	0.81[AMR][1000 genomes]
rs12668508	0.81[AMR][1000 genomes]
rs12671101	1.00[EUR][1000 genomes]
rs171927	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs196747	0.81[AMR][1000 genomes]
rs196754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs196759	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs196763	1.00[EUR][1000 genomes]
rs2060159	0.91[ASN][1000 genomes]
rs2060161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4721333	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73282311	0.81[AMR][1000 genomes]
rs73282318	0.81[AMR][1000 genomes]
rs73282321	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14418600-14428400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:14425400-14428800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:14426400-14428600	Weak transcription	Fetal Heart	heart
4	chr7:14428200-14429200	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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