Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239634	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10242478	0.81[AMR][1000 genomes]
rs10258060	1.00[YRI][hapmap]
rs10267135	0.81[AMR][1000 genomes]
rs10950523	0.89[JPT][hapmap]
rs10950524	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11761226	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs12666188	0.81[AMR][1000 genomes]
rs12668508	0.81[AMR][1000 genomes]
rs12671101	1.00[EUR][1000 genomes]
rs171927	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs196747	0.81[AMR][1000 genomes]
rs196754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs196759	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs196763	1.00[EUR][1000 genomes]
rs2060159	0.86[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4721333	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6461095	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs6461098	0.89[JPT][hapmap]
rs6971925	0.86[JPT][hapmap]
rs73282311	0.81[AMR][1000 genomes]
rs73282318	0.81[AMR][1000 genomes]
rs73282321	0.81[AMR][1000 genomes]
rs969596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv606281	chr7:14388381-14443963	Weak transcription Flanking Active TSS Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14429800-14434400	Weak transcription	Liver	Liver

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