Variant report
| Variant | rs10242478 |
|---|---|
| Chromosome Location | chr7:14514186-14514187 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10239079 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10239634 | 0.94[AMR][1000 genomes] |
| rs10267135 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10950524 | 1.00[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12538204 | 1.00[YRI][hapmap] |
| rs12666188 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12668508 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12670156 | 1.00[CHB][hapmap] |
| rs17168223 | 1.00[CHB][hapmap];0.95[ASN][1000 genomes] |
| rs17168227 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs171927 | 0.94[AMR][1000 genomes] |
| rs196747 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs196749 | 0.82[AMR][1000 genomes] |
| rs196752 | 0.84[AMR][1000 genomes] |
| rs196754 | 0.94[AMR][1000 genomes] |
| rs196759 | 0.94[AMR][1000 genomes] |
| rs196763 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2060161 | 0.81[AMR][1000 genomes] |
| rs4721339 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6957588 | 0.82[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs73282311 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73282318 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73282321 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73285809 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7782300 | 0.88[CHB][hapmap];0.91[AMR][1000 genomes] |
| rs969596 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949033 | chr7:14086106-14860323 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv915603 | chr7:14443884-14624268 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1848567 | chr7:14464118-14579801 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv887707 | chr7:14471682-14576163 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv887708 | chr7:14494508-14617982 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv1800100 | chr7:14511454-14564068 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:14513400-14517800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
