Variant report
Variant | rs1979378 |
---|---|
Chromosome Location | chrX:77710872-77710873 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs167674 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs320988 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs320990 | 0.93[CEU][hapmap] |
rs320992 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs320995 | 0.86[CEU][hapmap] |
rs320996 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs320999 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap] |
rs321005 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap] |
rs321007 | 0.82[CHB][hapmap] |
rs321028 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap] |
rs321029 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap] |
rs321073 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs321074 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs321085 | 0.80[CEU][hapmap];0.83[JPT][hapmap] |
rs321086 | 0.80[CEU][hapmap];0.83[JPT][hapmap] |
rs321088 | 0.86[CEU][hapmap];0.82[JPT][hapmap] |
rs321090 | 1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap] |
rs321091 | 1.00[CEU][hapmap];0.88[JPT][hapmap] |
rs321094 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs321095 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs379704 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap] |
rs428207 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap] |
rs4826052 | 0.82[CHB][hapmap] |
rs4826053 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
rs767400 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529299 | chrX:77040316-77947157 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
2 | nsv532880 | chrX:77085352-77769755 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 60 gene(s) | inside rSNPs | diseases |
3 | nsv521599 | chrX:77662439-78124078 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
4 | nsv528728 | chrX:77662439-78124078 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | nsv510835 | chrX:77694972-77782068 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chrX:77708600-77711400 | Weak transcription | Muscle Satellite Cultured Cells | -- |