Variant report

Variant	rs2035229
Chromosome Location	chr5:98128334-98128335
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98126420..98128371-chr5:98130230..98131989,2	MCF-7	breast:
2	chr5:98111277..98112925-chr5:98127736..98129977,2	MCF-7	breast:
3	chr5:98118498..98120988-chr5:98126962..98129374,2	MCF-7	breast:
4	chr5:98124225..98126572-chr5:98127471..98130049,2	K562	blood:
5	chr5:98124398..98126468-chr5:98128299..98131960,3	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11954623	1.00[AMR][1000 genomes]
rs11957518	1.00[AMR][1000 genomes]
rs1508794	1.00[AMR][1000 genomes]
rs1508795	1.00[AMR][1000 genomes]
rs17166354	1.00[AMR][1000 genomes]
rs17166367	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17166368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036691	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3952932	1.00[AMR][1000 genomes]
rs55660533	1.00[AMR][1000 genomes]
rs57293752	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58710516	1.00[AMR][1000 genomes]
rs6890688	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895731	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151405	1.00[AMR][1000 genomes]
rs73151407	1.00[AMR][1000 genomes]
rs73151426	1.00[AMR][1000 genomes]
rs73151428	1.00[AMR][1000 genomes]
rs73151441	1.00[AMR][1000 genomes]
rs73151444	1.00[AMR][1000 genomes]
rs73151454	1.00[AMR][1000 genomes]
rs73151459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151463	1.00[AMR][1000 genomes]
rs73151464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73151473	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153510	1.00[AMR][1000 genomes]
rs7707936	1.00[AMR][1000 genomes]
rs906681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98111000-98128800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:98111000-98131800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:98111600-98131800	Weak transcription	Placenta	Placenta
4	chr5:98112000-98135800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:98114800-98131400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:98117000-98128600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:98117600-98132200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr5:98118400-98131800	Weak transcription	A549	lung
9	chr5:98119200-98128800	Weak transcription	Spleen	Spleen
10	chr5:98119200-98129000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:98121200-98128800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:98121600-98128800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:98121800-98128600	Genic enhancers	Muscle Satellite Cultured Cells	--
14	chr5:98122000-98129000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:98122200-98132000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:98122400-98128800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr5:98122600-98128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:98123000-98132400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:98123200-98128800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr5:98123200-98129000	Weak transcription	GM12878-XiMat	blood
21	chr5:98123400-98128800	Weak transcription	Brain Hippocampus Middle	brain
22	chr5:98123400-98129000	Weak transcription	Right Ventricle	heart
23	chr5:98123600-98128600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:98123600-98128800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr5:98123600-98128800	Weak transcription	Brain Germinal Matrix	brain
26	chr5:98123600-98128800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:98123600-98128800	Weak transcription	Fetal Brain Female	brain
28	chr5:98123800-98128600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:98123800-98128600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:98123800-98128800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:98123800-98128800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr5:98123800-98128800	Weak transcription	Aorta	Aorta
33	chr5:98123800-98128800	Weak transcription	Esophagus	oesophagus
34	chr5:98123800-98128800	Weak transcription	Gastric	stomach
35	chr5:98123800-98128800	Weak transcription	Left Ventricle	heart
36	chr5:98123800-98128800	Weak transcription	Pancreas	Pancrea
37	chr5:98123800-98128800	Weak transcription	HepG2	liver
38	chr5:98123800-98130600	Weak transcription	Colonic Mucosa	Colon
39	chr5:98123800-98131000	Weak transcription	Right Atrium	heart
40	chr5:98123800-98132000	Weak transcription	Primary T cells from cord blood	blood
41	chr5:98123800-98136800	Weak transcription	Fetal Brain Male	brain
42	chr5:98123800-98140600	Weak transcription	Brain Substantia Nigra	brain
43	chr5:98124000-98128600	Weak transcription	Fetal Intestine Small	intestine
44	chr5:98124000-98128800	Weak transcription	HMEC	breast
45	chr5:98124000-98132000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:98124000-98132000	Weak transcription	Fetal Lung	lung
47	chr5:98124400-98128600	Weak transcription	HUVEC	blood vessel
48	chr5:98124400-98128800	Weak transcription	Lung	lung
49	chr5:98124600-98128600	Weak transcription	HSMMtube	muscle
50	chr5:98124600-98130600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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