Variant report

Variant	rs2049367
Chromosome Location	chr2:36668219-36668220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36659185..36660941-chr2:36665845..36668463,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10184816	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12996582	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2023549	0.82[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.94[LWK][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2160366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28705335	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3732073	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3770895	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3770901	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3821160	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4670146	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670556	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4670557	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68111949	0.87[EUR][1000 genomes]
rs888074	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.87[YRI][hapmap];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs918051	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2049367	CEBPZ	cis	parietal	SCAN

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
7	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
8	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:36658000-36668400	Weak transcription	Esophagus	oesophagus
10	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:36660600-36668400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr2:36660600-36668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:36660600-36668600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
17	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:36660800-36668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:36660800-36668400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:36660800-36668400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:36660800-36668400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:36660800-36668600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:36660800-36668600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:36660800-36668600	Weak transcription	Spleen	Spleen
26	chr2:36660800-36669600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr2:36660800-36670000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
29	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr2:36661000-36668400	Weak transcription	Fetal Stomach	stomach
32	chr2:36661000-36668600	Weak transcription	Fetal Kidney	kidney
33	chr2:36661000-36669200	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:36661000-36669800	Weak transcription	Fetal Brain Male	brain
35	chr2:36661200-36668800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:36661400-36668400	Weak transcription	Fetal Lung	lung
37	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
39	chr2:36661800-36668400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr2:36662000-36668600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr2:36662200-36668400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr2:36662400-36668600	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:36665200-36672000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr2:36665600-36669000	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr2:36665800-36668400	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr2:36665800-36669000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr2:36666000-36668400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:36666000-36668600	Genic enhancers	A549	lung
49	chr2:36666000-36668600	Genic enhancers	NHDF-Ad	bronchial
50	chr2:36666000-36669200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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