Variant report

Variant	rs3732073
Chromosome Location	chr2:36670011-36670012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10184816	0.88[ASN][1000 genomes]
rs12996582	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[ASN][1000 genomes]
rs17018675	0.81[JPT][hapmap]
rs2023549	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs2049367	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2160366	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28705335	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770895	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770901	0.98[ASN][1000 genomes]
rs3821160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs4670146	0.98[ASN][1000 genomes]
rs4670556	0.98[ASN][1000 genomes]
rs4670557	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs68111949	0.89[EUR][1000 genomes]
rs888074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs918051	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3732073	CEBPZ	cis	parietal	SCAN

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
3	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
4	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:36660800-36670200	Weak transcription	Fetal Brain Female	brain
8	chr2:36660800-36678000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:36660800-36695600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:36661400-36676400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:36661600-36683000	Genic enhancers	HUVEC	blood vessel
12	chr2:36665200-36672000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:36666200-36670600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:36666200-36681200	Genic enhancers	Osteobl	bone
15	chr2:36666400-36676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:36666400-36676400	Weak transcription	Pancreas	Pancrea
17	chr2:36666400-36686800	Weak transcription	Gastric	stomach
18	chr2:36666600-36675600	Strong transcription	NHEK	skin
19	chr2:36666600-36683400	Genic enhancers	NHLF	lung
20	chr2:36666800-36676600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:36667200-36671800	Strong transcription	NH-A	brain
22	chr2:36667800-36672400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:36667800-36672600	Strong transcription	HepG2	liver
24	chr2:36668000-36672000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:36668000-36672600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:36668000-36676600	Weak transcription	Fetal Heart	heart
27	chr2:36668200-36670800	Genic enhancers	HSMM	muscle
28	chr2:36668200-36671600	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr2:36668200-36672200	Strong transcription	Fetal Intestine Large	intestine
30	chr2:36668200-36676400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:36668200-36677200	Strong transcription	Hela-S3	cervix
32	chr2:36668200-36678400	Weak transcription	Small Intestine	intestine
33	chr2:36668400-36671400	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr2:36668400-36671600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr2:36668400-36672000	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr2:36668400-36672600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:36668400-36673000	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr2:36668600-36670200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr2:36668600-36670800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
40	chr2:36668600-36671400	Genic enhancers	Fetal Kidney	kidney
41	chr2:36668600-36672000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:36668600-36672600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:36668600-36677400	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr2:36668800-36670400	Weak transcription	Esophagus	oesophagus
45	chr2:36668800-36671000	Genic enhancers	Muscle Satellite Cultured Cells	--
46	chr2:36668800-36672400	Weak transcription	Spleen	Spleen
47	chr2:36668800-36672600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr2:36668800-36673800	Weak transcription	Liver	Liver
49	chr2:36668800-36673800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr2:36668800-36674600	Weak transcription	Right Atrium	heart

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