Variant report

Variant	rs3770895
Chromosome Location	chr2:36656471-36656472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:36655361..36657186-chr2:36662322..36664635,2	K562	blood:
2	chr2:36605127..36607933-chr2:36655306..36657795,2	MCF-7	breast:
3	chr2:36653170..36656260-chr2:36656340..36659341,3	K562	blood:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10184816	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12996582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17018675	0.81[JPT][hapmap]
rs2023549	0.82[CEU][hapmap];0.84[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.91[LWK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2049367	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2160366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28705335	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3732073	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3770901	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670146	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670556	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670557	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68111949	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs888074	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs918051	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3770895	CEBPZ	cis	parietal	SCAN

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:36644200-36657200	Weak transcription	Brain Anterior Caudate	brain
4	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
5	chr2:36644400-36656800	Weak transcription	Fetal Stomach	stomach
6	chr2:36644400-36657200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:36644400-36665600	Weak transcription	Gastric	stomach
9	chr2:36644600-36656600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:36648000-36656800	Weak transcription	Right Atrium	heart
11	chr2:36648000-36657000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
13	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
15	chr2:36648200-36660200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr2:36648200-36660400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr2:36648400-36657200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr2:36648600-36657200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr2:36648600-36659600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:36649000-36657600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr2:36650000-36657400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:36650600-36659600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
25	chr2:36651400-36658400	Genic enhancers	Osteobl	bone
26	chr2:36651400-36658800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr2:36651600-36657200	Weak transcription	Fetal Heart	heart
28	chr2:36651600-36659600	Weak transcription	Fetal Intestine Large	intestine
29	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
30	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:36651800-36660200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
34	chr2:36652000-36656600	Weak transcription	HSMMtube	muscle
35	chr2:36652000-36658800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr2:36652200-36658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
38	chr2:36652400-36658800	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr2:36652400-36660200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr2:36652400-36660200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr2:36654200-36659000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr2:36654400-36656600	Genic enhancers	HSMM	muscle
45	chr2:36654400-36658000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr2:36654400-36658200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr2:36654400-36659000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr2:36654400-36659000	Genic enhancers	HUVEC	blood vessel
49	chr2:36654600-36658400	Genic enhancers	NHDF-Ad	bronchial
50	chr2:36654600-36660200	Genic enhancers	Muscle Satellite Cultured Cells	--

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