Variant report

Variant	rs918051
Chromosome Location	chr2:36643598-36643599
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10184816	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996582	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2049367	0.83[ASN][1000 genomes]
rs2160366	0.86[ASN][1000 genomes]
rs28705335	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3732073	0.88[ASN][1000 genomes]
rs3770895	0.89[ASN][1000 genomes]
rs3770901	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3821160	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670146	0.89[ASN][1000 genomes]
rs4670556	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4670557	0.89[ASN][1000 genomes]
rs68111949	0.83[EUR][1000 genomes]
rs888074	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36624800-36643600	Weak transcription	Colonic Mucosa	Colon
2	chr2:36625600-36643800	Weak transcription	Fetal Intestine Small	intestine
3	chr2:36626000-36643800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:36631600-36644600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:36632200-36648000	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr2:36635800-36643800	Weak transcription	Fetal Intestine Large	intestine
7	chr2:36635800-36644000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:36635800-36647600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:36636000-36647600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:36636000-36647600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:36636800-36643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr2:36636800-36647600	Weak transcription	Lung	lung
13	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
14	chr2:36638000-36644400	Strong transcription	NHEK	skin
15	chr2:36638000-36647800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr2:36638200-36647600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:36638400-36646400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr2:36639000-36644600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:36639200-36643800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr2:36639400-36647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:36639600-36643800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:36639600-36644000	Weak transcription	Gastric	stomach
23	chr2:36639600-36644000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr2:36639600-36646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr2:36639600-36647600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:36639600-36647800	Weak transcription	Spleen	Spleen
27	chr2:36639800-36643800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:36640000-36656000	Genic enhancers	A549	lung
29	chr2:36640200-36644600	Enhancers	Fetal Lung	lung
30	chr2:36640200-36645400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:36640200-36653400	Genic enhancers	HUVEC	blood vessel
32	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr2:36640400-36645800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr2:36640400-36646800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr2:36640400-36647000	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr2:36640400-36647200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr2:36640800-36644600	Enhancers	Adipose Nuclei	Adipose
38	chr2:36640800-36646400	Strong transcription	HSMM	muscle
39	chr2:36640800-36647400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr2:36640800-36651200	Weak transcription	HSMMtube	muscle
41	chr2:36641000-36643600	Weak transcription	Fetal Brain Male	brain
42	chr2:36641000-36644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr2:36641000-36644400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr2:36641000-36645400	Strong transcription	Hela-S3	cervix
45	chr2:36641000-36650000	Weak transcription	NH-A	brain
46	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:36641400-36643600	Weak transcription	Brain Angular Gyrus	brain
48	chr2:36641400-36644400	Enhancers	Colon Smooth Muscle	Colon
49	chr2:36641400-36647400	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr2:36641400-36647600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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