Variant report

Variant	rs3770901
Chromosome Location	chr2:36650012-36650013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10184816	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12996582	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2023549	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2049367	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2160366	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28705335	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3732073	0.98[ASN][1000 genomes]
rs3770895	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3821160	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4670146	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670556	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670557	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68111949	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs888074	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs918051	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2756915	chr2:36622906-36657305	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2759041	chr2:36622906-36657305	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36636800-36656000	Weak transcription	Esophagus	oesophagus
2	chr2:36640000-36656000	Genic enhancers	A549	lung
3	chr2:36640200-36653400	Genic enhancers	HUVEC	blood vessel
4	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:36640800-36651200	Weak transcription	HSMMtube	muscle
6	chr2:36641200-36659200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:36641400-36650400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:36641600-36651600	Enhancers	Fetal Heart	heart
9	chr2:36644200-36651400	Weak transcription	Colonic Mucosa	Colon
10	chr2:36644200-36651600	Weak transcription	HMEC	breast
11	chr2:36644200-36657200	Weak transcription	Brain Anterior Caudate	brain
12	chr2:36644200-36660000	Weak transcription	Fetal Brain Female	brain
13	chr2:36644400-36650600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:36644400-36651400	Weak transcription	NHEK	skin
15	chr2:36644400-36653000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:36644400-36656800	Weak transcription	Fetal Stomach	stomach
17	chr2:36644400-36657200	Weak transcription	Colon Smooth Muscle	Colon
18	chr2:36644400-36659600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr2:36644400-36665600	Weak transcription	Gastric	stomach
20	chr2:36644600-36650600	Weak transcription	Fetal Intestine Large	intestine
21	chr2:36644600-36651000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:36644600-36653000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:36644600-36656600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr2:36644800-36650600	Weak transcription	Fetal Intestine Small	intestine
25	chr2:36645200-36651600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr2:36645400-36650200	Genic enhancers	Osteobl	bone
27	chr2:36645400-36652200	Weak transcription	Hela-S3	cervix
28	chr2:36645800-36650600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr2:36646200-36654600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr2:36646600-36650200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr2:36646600-36651000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:36646800-36651200	Weak transcription	Right Ventricle	heart
33	chr2:36647000-36650600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr2:36647200-36650600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr2:36647200-36654600	Weak transcription	Small Intestine	intestine
36	chr2:36647400-36650800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr2:36648000-36650400	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr2:36648000-36651400	Weak transcription	HepG2	liver
39	chr2:36648000-36654400	Strong transcription	HSMM	muscle
40	chr2:36648000-36656800	Weak transcription	Right Atrium	heart
41	chr2:36648000-36657000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr2:36648000-36659600	Weak transcription	Brain Angular Gyrus	brain
43	chr2:36648000-36659800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr2:36648000-36660200	Weak transcription	Pancreas	Pancrea
45	chr2:36648200-36651200	Weak transcription	Placenta	Placenta
46	chr2:36648200-36651200	Weak transcription	NHLF	lung
47	chr2:36648200-36651400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr2:36648200-36651400	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr2:36648200-36651400	Weak transcription	Left Ventricle	heart
50	chr2:36648200-36651400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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