Variant report

Variant	rs2160366
Chromosome Location	chr2:36661672-36661673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36587591..36589572-chr2:36660142..36662034,2	MCF-7	breast:
2	chr2:36581891..36584945-chr2:36659676..36663580,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150938	Chromatin interaction
ENSG00000260025	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10184816	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12996582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17018675	0.81[JPT][hapmap]
rs2023549	0.80[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2049367	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28705335	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3732073	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3770895	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3770901	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3821160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4670146	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670556	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670557	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68111949	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs888074	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs918051	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36640200-36680000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36644400-36665600	Weak transcription	Gastric	stomach
3	chr2:36649600-36662200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr2:36650600-36676600	Weak transcription	Stomach Mucosa	stomach
5	chr2:36651600-36668400	Weak transcription	Fetal Intestine Small	intestine
6	chr2:36651600-36668400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr2:36651800-36668400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr2:36651800-36686800	Weak transcription	Colonic Mucosa	Colon
9	chr2:36652200-36668600	Weak transcription	Primary B cells from cord blood	blood
10	chr2:36653000-36667800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr2:36653400-36669400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:36655400-36662600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:36657000-36665600	Genic enhancers	A549	lung
14	chr2:36658000-36668400	Weak transcription	Esophagus	oesophagus
15	chr2:36658400-36665400	Enhancers	NHDF-Ad	bronchial
16	chr2:36658800-36662200	Genic enhancers	HSMM	muscle
17	chr2:36659600-36661800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:36660000-36662000	Enhancers	Brain Anterior Caudate	brain
19	chr2:36660000-36662400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:36660200-36661800	Flanking Active TSS	NHEK	skin
21	chr2:36660200-36662200	Enhancers	HSMMtube	muscle
22	chr2:36660400-36662600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:36660400-36671800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr2:36660600-36661800	Enhancers	Rectal Smooth Muscle	rectum
25	chr2:36660600-36662400	Enhancers	Aorta	Aorta
26	chr2:36660600-36666200	Weak transcription	Pancreas	Pancrea
27	chr2:36660600-36668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:36660600-36668200	Weak transcription	Fetal Intestine Large	intestine
29	chr2:36660600-36668400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:36660600-36668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr2:36660600-36668600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:36660600-36669600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:36660600-36669600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr2:36660600-36669800	Weak transcription	Brain Angular Gyrus	brain
35	chr2:36660600-36682600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr2:36660600-36683000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr2:36660800-36662000	Enhancers	Adipose Nuclei	Adipose
38	chr2:36660800-36662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr2:36660800-36663400	Enhancers	NHLF	lung
40	chr2:36660800-36663600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:36660800-36664800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr2:36660800-36665600	Weak transcription	Placenta	Placenta
43	chr2:36660800-36665600	Weak transcription	Ovary	ovary
44	chr2:36660800-36665600	Weak transcription	Right Ventricle	heart
45	chr2:36660800-36666000	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr2:36660800-36666200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:36660800-36666200	Weak transcription	Lung	lung
48	chr2:36660800-36668000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr2:36660800-36668400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr2:36660800-36668400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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