Variant report

Variant	rs2066673
Chromosome Location	chr13:50835021-50835022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50820155..50822881-chr13:50833339..50835022,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11842790	1.00[ASN][1000 genomes]
rs12853498	1.00[ASN][1000 genomes]
rs12855386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12867018	1.00[ASN][1000 genomes]
rs12871645	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12874278	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12874827	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12876227	1.00[ASN][1000 genomes]
rs17074093	1.00[ASN][1000 genomes]
rs17074141	1.00[ASN][1000 genomes]
rs17074143	1.00[ASN][1000 genomes]
rs17074145	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17363026	1.00[ASN][1000 genomes]
rs17363566	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2066664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066679	1.00[ASN][1000 genomes]
rs3095158	0.87[ASN][1000 genomes]
rs3095160	0.87[ASN][1000 genomes]
rs3095164	0.87[ASN][1000 genomes]
rs3095165	0.87[ASN][1000 genomes]
rs3116594	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs3116595	0.87[ASN][1000 genomes]
rs3118648	0.87[ASN][1000 genomes]
rs3118649	0.87[ASN][1000 genomes]
rs3118650	0.87[ASN][1000 genomes]
rs34042295	1.00[ASN][1000 genomes]
rs34229978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34357487	1.00[ASN][1000 genomes]
rs34374535	1.00[ASN][1000 genomes]
rs34453016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34556868	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34700115	1.00[ASN][1000 genomes]
rs34712361	1.00[ASN][1000 genomes]
rs34972893	1.00[ASN][1000 genomes]
rs35299189	1.00[ASN][1000 genomes]
rs35383320	1.00[ASN][1000 genomes]
rs35413012	1.00[ASN][1000 genomes]
rs35542898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35650342	1.00[ASN][1000 genomes]
rs35902227	1.00[ASN][1000 genomes]
rs35980102	1.00[ASN][1000 genomes]
rs67217502	1.00[ASN][1000 genomes]
rs67964536	1.00[ASN][1000 genomes]
rs706603	1.00[ASN][1000 genomes]
rs71428294	1.00[ASN][1000 genomes]
rs71436217	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71436218	1.00[ASN][1000 genomes]
rs71436219	1.00[ASN][1000 genomes]
rs71436220	1.00[ASN][1000 genomes]
rs71436222	1.00[ASN][1000 genomes]
rs7986582	0.86[ASN][1000 genomes]
rs7990202	1.00[ASN][1000 genomes]
rs806315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806318	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv561631	chr13:50761619-50846748	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50828000-50841400	Weak transcription	HepG2	liver
2	chr13:50834000-50835400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr13:50834200-50835400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr13:50835000-50835600	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links