Variant report

Variant	rs34700115
Chromosome Location	chr13:50929020-50929021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50697643..50701953-chr13:50927459..50931609,5	MCF-7	breast:
2	chr13:50923658..50925189-chr13:50928081..50930384,2	MCF-7	breast:
3	chr13:50921012..50924496-chr13:50928221..50931667,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231607	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11842790	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12853498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12855386	1.00[ASN][1000 genomes]
rs12867018	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12871645	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12874278	1.00[ASN][1000 genomes]
rs12874827	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12876227	1.00[ASN][1000 genomes]
rs17074093	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074141	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17074145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17363026	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17363566	1.00[ASN][1000 genomes]
rs2066664	1.00[ASN][1000 genomes]
rs2066673	1.00[ASN][1000 genomes]
rs2066679	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3095158	0.87[ASN][1000 genomes]
rs3095160	0.87[ASN][1000 genomes]
rs3095164	0.87[ASN][1000 genomes]
rs3095165	0.87[ASN][1000 genomes]
rs3116594	0.87[ASN][1000 genomes]
rs3116595	0.87[ASN][1000 genomes]
rs3118648	0.87[ASN][1000 genomes]
rs3118649	0.87[ASN][1000 genomes]
rs3118650	0.87[ASN][1000 genomes]
rs34042295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34357487	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34374535	1.00[ASN][1000 genomes]
rs34453016	1.00[ASN][1000 genomes]
rs34556868	1.00[ASN][1000 genomes]
rs34712361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34972893	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35299189	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35383320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35413012	1.00[ASN][1000 genomes]
rs35542898	1.00[ASN][1000 genomes]
rs35650342	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35902227	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980102	1.00[ASN][1000 genomes]
rs67217502	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67964536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706603	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71428294	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436217	1.00[ASN][1000 genomes]
rs71436218	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436219	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436220	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71436222	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986582	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7990202	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806315	1.00[ASN][1000 genomes]
rs806318	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50926600-50929400	Enhancers	NHDF-Ad	bronchial
2	chr13:50926600-50933000	Enhancers	Liver	Liver
3	chr13:50926600-50934800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr13:50927200-50930400	Enhancers	Fetal Thymus	thymus
5	chr13:50927400-50929400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:50927600-50931400	Weak transcription	Left Ventricle	heart
7	chr13:50927600-50931400	Weak transcription	Psoas Muscle	Psoas
8	chr13:50927600-50931400	Weak transcription	HepG2	liver
9	chr13:50927800-50931200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:50928000-50929200	Enhancers	Duodenum Mucosa	Duodenum
11	chr13:50928000-50929400	Enhancers	Thymus	Thymus
12	chr13:50928000-50929600	Enhancers	Dnd41	blood
13	chr13:50928400-50929400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr13:50928400-50931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:50928400-50931600	Weak transcription	Aorta	Aorta
16	chr13:50928400-50932400	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr13:50928600-50929400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:50928600-50931000	Weak transcription	Fetal Lung	lung
19	chr13:50928600-50931000	Weak transcription	Fetal Muscle Leg	muscle
20	chr13:50928600-50931200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr13:50928600-50931200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:50928600-50931200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:50928600-50931200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:50928600-50931200	Weak transcription	Colon Smooth Muscle	Colon
25	chr13:50928600-50931200	Weak transcription	Fetal Kidney	kidney
26	chr13:50928600-50931200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr13:50928600-50931200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr13:50928600-50931200	Weak transcription	NH-A	brain
29	chr13:50928600-50931200	Weak transcription	Osteobl	bone
30	chr13:50928600-50931400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr13:50928600-50931400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:50928600-50931400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr13:50928600-50931400	Weak transcription	HSMM	muscle
34	chr13:50928600-50932400	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr13:50928800-50929200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:50928800-50929400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr13:50928800-50930200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr13:50928800-50931200	Weak transcription	NHLF	lung
39	chr13:50928800-50931600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:50929000-50929200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr13:50929000-50929200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:50929000-50929200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr13:50929000-50929200	Enhancers	Esophagus	oesophagus
44	chr13:50929000-50929200	Enhancers	Lung	lung
45	chr13:50929000-50929400	Enhancers	Pancreas	Pancrea
46	chr13:50929000-50929600	Enhancers	Primary B cells from cord blood	blood
47	chr13:50929000-50930400	Enhancers	Primary B cells from peripheral blood	blood
48	chr13:50929000-50931600	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links