Variant report

Variant	rs2096784
Chromosome Location	chr11:71836278-71836279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71822719..71827251-chr11:71832148..71836901,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110200	Chromatin interaction
ENSG00000110203	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10400327	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1540087	1.00[MEX][hapmap]
rs17162064	1.00[MEX][hapmap]
rs17162069	1.00[MEX][hapmap]
rs1892922	1.00[AMR][1000 genomes]
rs3763796	1.00[MEX][hapmap]
rs57198333	1.00[AMR][1000 genomes]
rs5743667	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743673	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743683	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743684	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs58109845	1.00[AMR][1000 genomes]
rs58569034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860532	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58986282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59704482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60401386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840528	1.00[AMR][1000 genomes]
rs61225837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102392	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7109250	1.00[MEX][hapmap]
rs7110215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7125189	1.00[MEX][hapmap]
rs7925196	1.00[AMR][1000 genomes]
rs7925545	1.00[MEX][hapmap]
rs7932163	1.00[YRI][hapmap]
rs7945535	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7949845	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2096784	AHSP	trans	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:71833400-71836600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:71834000-71837600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:71835400-71836400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
6	chr11:71835400-71836800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:71835800-71836600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:71836000-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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