Variant report

Variant	rs60401386
Chromosome Location	chr11:71834498-71834499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10400327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1892922	1.00[AMR][1000 genomes]
rs2096784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57198333	1.00[AMR][1000 genomes]
rs5743667	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743673	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743683	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743684	1.00[AMR][1000 genomes]
rs58109845	1.00[AMR][1000 genomes]
rs58569034	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860532	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58986282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59704482	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840528	1.00[AMR][1000 genomes]
rs61225837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102392	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925196	1.00[AMR][1000 genomes]
rs7945535	1.00[AMR][1000 genomes]
rs7949845	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71824800-71834600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:71831200-71835000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr11:71831400-71835000	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:71833200-71835000	Enhancers	K562	blood
6	chr11:71833400-71835000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr11:71833400-71835600	Enhancers	Spleen	Spleen
8	chr11:71833400-71835600	Enhancers	Hela-S3	cervix
9	chr11:71833400-71836600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:71834000-71837600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr11:71834200-71834600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:71834200-71835600	Enhancers	NHEK	skin
13	chr11:71834400-71834600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:71834400-71835400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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