Variant report

Variant	rs59704482
Chromosome Location	chr11:71809224-71809225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71808840..71811674-chr11:71882236..71884134,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255860	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10400327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1892922	1.00[AMR][1000 genomes]
rs2096784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57198333	1.00[AMR][1000 genomes]
rs5743667	1.00[AMR][1000 genomes]
rs5743673	1.00[AMR][1000 genomes]
rs5743683	1.00[AMR][1000 genomes]
rs5743684	1.00[AMR][1000 genomes]
rs58109845	1.00[AMR][1000 genomes]
rs58569034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58860532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58986282	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603657	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60401386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840528	1.00[AMR][1000 genomes]
rs61225837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925196	1.00[AMR][1000 genomes]
rs7945535	1.00[AMR][1000 genomes]
rs7949845	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71792600-71812800	Weak transcription	Fetal Heart	heart
2	chr11:71792600-71813200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:71798000-71812200	Weak transcription	Fetal Brain Male	brain
4	chr11:71800400-71812000	Strong transcription	Primary T cells from cord blood	blood
5	chr11:71802800-71810000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:71803000-71810800	Strong transcription	Fetal Muscle Leg	muscle
7	chr11:71803600-71810200	Strong transcription	Stomach Smooth Muscle	stomach
8	chr11:71803800-71809400	Strong transcription	Placenta	Placenta
9	chr11:71803800-71809800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:71803800-71810800	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr11:71803800-71811200	Strong transcription	Brain Angular Gyrus	brain
12	chr11:71804000-71812800	Strong transcription	Fetal Stomach	stomach
13	chr11:71804200-71810000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:71804200-71810200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr11:71804200-71810400	Strong transcription	Adipose Nuclei	Adipose
16	chr11:71804200-71810400	Strong transcription	Brain Hippocampus Middle	brain
17	chr11:71804200-71810600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr11:71804200-71811200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:71804200-71811600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:71804200-71811600	Strong transcription	Gastric	stomach
21	chr11:71804200-71811800	Strong transcription	Brain Inferior Temporal Lobe	brain
22	chr11:71804200-71812200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:71804200-71812200	Strong transcription	Fetal Intestine Large	intestine
24	chr11:71804400-71809600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:71804400-71810400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:71804400-71810400	Strong transcription	Fetal Thymus	thymus
27	chr11:71804400-71810600	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:71804400-71810600	Strong transcription	Liver	Liver
29	chr11:71804400-71811000	Strong transcription	Primary B cells from peripheral blood	blood
30	chr11:71804400-71811000	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr11:71804400-71811200	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:71804400-71811200	Strong transcription	Fetal Intestine Small	intestine
33	chr11:71804400-71811200	Strong transcription	Osteobl	bone
34	chr11:71804400-71811400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr11:71804400-71811400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:71804400-71811800	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:71804400-71811800	Strong transcription	NHLF	lung
38	chr11:71804400-71812800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:71804400-71812800	Strong transcription	A549	lung
40	chr11:71804600-71810000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr11:71804600-71810000	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr11:71804600-71810400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr11:71804600-71811600	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:71804600-71811800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:71804600-71812600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:71804800-71811600	Strong transcription	Thymus	Thymus
47	chr11:71804800-71812000	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr11:71805200-71810200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:71805200-71810200	Strong transcription	HSMMtube	muscle
50	chr11:71805200-71810600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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