Variant report

Variant	rs61225837
Chromosome Location	chr11:71759621-71759622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr11:71759601-71759675	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71743810..71760160-chr11:71777190..71805714,79	MCF-7	breast:

Variant related genes	Relation type
RNU6-292P	TF binding region
ENSG00000263742	Chromatin interaction
ENSG00000137497	Chromatin interaction
ENSG00000184154	Chromatin interaction
ENSG00000212089	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10400327	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1892922	1.00[AMR][1000 genomes]
rs2096784	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57198333	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743667	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743673	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743683	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5743684	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58109845	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58569034	1.00[AMR][1000 genomes]
rs58860532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58986282	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603657	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59704482	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60401386	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840528	1.00[AMR][1000 genomes]
rs7102392	1.00[AMR][1000 genomes]
rs7110215	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925196	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945535	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7949845	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv428262	chr11:71363639-71804055	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71753200-71759800	Weak transcription	K562	blood
2	chr11:71753200-71772800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:71753200-71773000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr11:71753400-71759800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:71753400-71765800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:71753400-71769800	Weak transcription	Psoas Muscle	Psoas
7	chr11:71753800-71759800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr11:71753800-71759800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:71753800-71759800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:71753800-71759800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:71753800-71759800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr11:71753800-71760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:71753800-71760200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:71753800-71764600	Weak transcription	HSMM	muscle
15	chr11:71754000-71759800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr11:71754000-71760000	Weak transcription	Right Atrium	heart
17	chr11:71754000-71767200	Weak transcription	Small Intestine	intestine
18	chr11:71754000-71769600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:71754000-71769600	Weak transcription	NH-A	brain
20	chr11:71754000-71769600	Weak transcription	NHLF	lung
21	chr11:71754000-71769600	Weak transcription	Osteobl	bone
22	chr11:71754000-71771400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:71754000-71772000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:71754200-71759800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:71754200-71759800	Weak transcription	Primary B cells from cord blood	blood
26	chr11:71754200-71759800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:71754200-71759800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:71754200-71760000	Weak transcription	Spleen	Spleen
29	chr11:71754200-71760000	Weak transcription	A549	lung
30	chr11:71754200-71769400	Weak transcription	HMEC	breast
31	chr11:71754200-71769400	Weak transcription	NHDF-Ad	bronchial
32	chr11:71754200-71769400	Weak transcription	NHEK	skin
33	chr11:71754200-71769600	Weak transcription	HSMMtube	muscle
34	chr11:71754200-71771000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:71754200-71772800	Weak transcription	Lung	lung
36	chr11:71754200-71777400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr11:71754200-71777600	Weak transcription	Brain Germinal Matrix	brain
38	chr11:71754200-71777600	Weak transcription	Colonic Mucosa	Colon
39	chr11:71754200-71777800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr11:71754200-71780200	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:71754200-71780400	Weak transcription	Aorta	Aorta
42	chr11:71754200-71789600	Weak transcription	Fetal Brain Female	brain
43	chr11:71754400-71761600	Weak transcription	Fetal Heart	heart
44	chr11:71754800-71781000	Weak transcription	Fetal Intestine Large	intestine
45	chr11:71755000-71759800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:71755000-71780800	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr11:71755200-71780400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr11:71755400-71765400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:71755400-71783000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:71755600-71759800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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