Variant report

Variant	rs58569034
Chromosome Location	chr11:71827841-71827842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10400327	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1892922	1.00[AMR][1000 genomes]
rs2096784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57198333	1.00[AMR][1000 genomes]
rs5743667	1.00[AMR][1000 genomes]
rs5743673	1.00[AMR][1000 genomes]
rs5743683	1.00[AMR][1000 genomes]
rs5743684	1.00[AMR][1000 genomes]
rs58109845	1.00[AMR][1000 genomes]
rs58860532	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58986282	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603657	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59704482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60401386	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840528	1.00[AMR][1000 genomes]
rs61225837	1.00[AMR][1000 genomes]
rs7102392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110215	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925196	1.00[AMR][1000 genomes]
rs7945535	1.00[AMR][1000 genomes]
rs7949845	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71824600-71828400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:71824600-71829000	Weak transcription	Right Atrium	heart
3	chr11:71824600-71829400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:71824600-71829400	Weak transcription	Stomach Mucosa	stomach
5	chr11:71824600-71829800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:71824600-71830200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:71824800-71829400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:71824800-71830000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:71824800-71834600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:71825200-71829400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:71826000-71830400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:71826000-71830600	Enhancers	K562	blood
13	chr11:71826400-71828200	Enhancers	NHEK	skin
14	chr11:71826800-71828000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:71826800-71828600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:71827000-71828200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:71827200-71829400	Weak transcription	NHDF-Ad	bronchial
18	chr11:71827400-71833400	Weak transcription	Hela-S3	cervix
19	chr11:71827600-71830400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:71827800-71828000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:71827800-71828200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:71827800-71828600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin

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