Variant report

Variant	rs58860532
Chromosome Location	chr11:71843184-71843185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10400327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1892922	1.00[AMR][1000 genomes]
rs2096784	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57198333	1.00[AMR][1000 genomes]
rs5743667	1.00[AMR][1000 genomes]
rs5743673	1.00[AMR][1000 genomes]
rs5743683	1.00[AMR][1000 genomes]
rs5743684	1.00[AMR][1000 genomes]
rs58109845	1.00[AMR][1000 genomes]
rs58569034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58986282	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59603657	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59704482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60401386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840528	1.00[AMR][1000 genomes]
rs61225837	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7102392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925196	1.00[AMR][1000 genomes]
rs7945535	1.00[AMR][1000 genomes]
rs7949845	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:71836000-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71836800-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:71839600-71843600	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr11:71839800-71846600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:71842400-71844000	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:71842400-71845000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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