The 2.0 version of rSNPBase

Variant report

Variant rs2160086
Chromosome Location chr12:9912182-9912183
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:9903400-9917600 Weak transcription H1 Cell Line embryonic stem cell
2 chr12:9904400-9913200 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr12:9904600-9913400 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
4 chr12:9905600-9913400 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
5 chr12:9909000-9914800 Active TSS Thymus Thymus
6 chr12:9909600-9913400 Active TSS Fetal Thymus thymus
7 chr12:9909600-9914200 Active TSS Primary T killer memory cells from peripheral blood blood
8 chr12:9909800-9914000 Active TSS K562 blood
9 chr12:9909800-9914400 Active TSS Primary T cells fromperipheralblood blood
10 chr12:9910200-9914200 Active TSS Rectal Mucosa Donor 29 rectum
11 chr12:9910400-9913600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
12 chr12:9910400-9914000 Active TSS Primary T killer naive cells fromperipheralblood blood
13 chr12:9910400-9914400 Active TSS Primary T helper memory cells from peripheral blood 2 blood
14 chr12:9910400-9914400 Active TSS Primary T helper naive cells from peripheral blood blood
15 chr12:9910600-9912200 Active TSS Primary T helper memory cells from peripheral blood 1 blood
16 chr12:9910600-9912800 Active TSS Dnd41 blood
17 chr12:9910600-9913600 Active TSS Primary hematopoietic stem cells short term culture blood
18 chr12:9910600-9913600 Active TSS Primary T regulatory cells fromperipheralblood blood
19 chr12:9910600-9914400 Active TSS Primary T cells from cord blood blood
20 chr12:9910600-9914400 Active TSS Primary Natural Killer cells fromperipheralblood blood
21 chr12:9910800-9913400 Active TSS Sigmoid Colon Sigmoid Colon
22 chr12:9911000-9912400 Active TSS Brain Hippocampus Middle brain
23 chr12:9911000-9913800 Active TSS Rectal Mucosa Donor 31 rectum
24 chr12:9911000-9914000 Active TSS Duodenum Mucosa Duodenum
25 chr12:9911200-9913000 Active TSS Small Intestine intestine
26 chr12:9911200-9913600 Active TSS Primary T helper cells fromperipheralblood blood
27 chr12:9911200-9913600 Active TSS Rectal Smooth Muscle rectum
28 chr12:9911200-9913600 Active TSS GM12878-XiMat blood
29 chr12:9911400-9913400 Active TSS Primary B cells from cord blood blood
30 chr12:9911400-9913600 Active TSS Primary B cells from peripheral blood blood
31 chr12:9911400-9913600 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr12:9911400-9913600 Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr12:9911600-9912200 Active TSS Primary T helper naive cells fromperipheralblood blood
34 chr12:9911600-9912400 Weak transcription Duodenum Smooth Muscle Duodenum
35 chr12:9911600-9913400 Active TSS Primary hematopoietic stem cells blood
36 chr12:9911600-9913400 Weak transcription Placenta Placenta
37 chr12:9911800-9913000 Bivalent/Poised TSS Liver Liver
38 chr12:9912000-9912200 Active TSS Primary mononuclear cells fromperipheralblood Blood
39 chr12:9912000-9912200 Active TSS Monocytes-CD14+_RO01746 blood
40 chr12:9912000-9912600 Enhancers Primary monocytes fromperipheralblood blood
41 chr12:9912000-9912800 Weak transcription Adipose Nuclei Adipose
42 chr12:9912000-9914200 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015