Variant report

Variant	rs10844769
Chromosome Location	chr12:9932885-9932886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1029990	0.82[ASN][1000 genomes]
rs1029991	0.82[ASN][1000 genomes]
rs1029992	0.82[ASN][1000 genomes]
rs1029993	0.82[ASN][1000 genomes]
rs1029994	0.82[ASN][1000 genomes]
rs10772127	0.80[ASN][1000 genomes]
rs10772128	0.80[ASN][1000 genomes]
rs10772132	0.82[ASN][1000 genomes]
rs10772137	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10772138	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844737	0.82[ASN][1000 genomes]
rs10844749	0.82[ASN][1000 genomes]
rs10844750	0.82[ASN][1000 genomes]
rs10844790	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11053043	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12301123	0.83[AFR][1000 genomes]
rs12582052	0.82[ASN][1000 genomes]
rs12824491	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1540355	0.82[ASN][1000 genomes]
rs1540356	0.82[ASN][1000 genomes]
rs1861090	0.83[ASN][1000 genomes]
rs2071647	0.86[JPT][hapmap]
rs2098299	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110449	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110450	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110451	0.83[ASN][1000 genomes]
rs2110452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2160086	0.86[JPT][hapmap]
rs2160087	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3136559	0.86[JPT][hapmap]
rs3136563	0.86[JPT][hapmap]
rs3176773	0.81[JPT][hapmap]
rs3176775	0.86[JPT][hapmap]
rs3176776	0.85[JPT][hapmap]
rs3176787	0.86[JPT][hapmap]
rs3176789	0.86[JPT][hapmap]
rs4385980	0.82[ASN][1000 genomes]
rs4519175	0.82[ASN][1000 genomes]
rs4519176	0.82[ASN][1000 genomes]
rs4763316	0.83[AFR][1000 genomes]
rs724666	0.82[ASN][1000 genomes]
rs724667	0.81[ASN][1000 genomes]
rs724668	0.82[ASN][1000 genomes]
rs7488011	0.82[ASN][1000 genomes]
rs7958251	0.80[ASN][1000 genomes]
rs7958591	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7964603	0.84[AFR][1000 genomes]
rs7972330	0.84[AFR][1000 genomes]
rs7976639	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978977	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9927600-9934000	Weak transcription	Thymus	Thymus
2	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr12:9927800-9935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:9928000-9935600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr12:9928400-9945400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:9929800-9935200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:9929800-9936000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr12:9930000-9933200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:9930000-9933800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr12:9930000-9934200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr12:9930000-9945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr12:9930200-9933600	Weak transcription	Primary T cells from cord blood	blood
13	chr12:9930200-9933800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr12:9930200-9945800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:9930400-9934000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:9930600-9934200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr12:9932400-9933000	Active TSS	Duodenum Mucosa	Duodenum
18	chr12:9932800-9933200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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