Variant report

Variant	rs2110449
Chromosome Location	chr12:9938034-9938035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:9937628..9939734-chr12:9949484..9951679,2	K562	blood:
2	chr12:9936591..9939111-chr12:9947051..9948836,2	K562	blood:
3	chr12:9928036..9930338-chr12:9937118..9939542,2	K562	blood:
4	chr12:9937824..9939854-chr12:9940356..9942873,2	K562	blood:
5	chr12:9912416..9914377-chr12:9936821..9938730,2	K562	blood:
6	chr12:9906322..9908011-chr12:9937316..9939333,2	K562	blood:
7	chr12:9935876..9938398-chr12:9943768..9945628,3	K562	blood:
8	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:
9	chr12:9936898..9938906-chr12:9943638..9945628,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10772137	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10772138	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844769	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844790	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053043	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12301123	0.82[AFR][1000 genomes]
rs12824491	0.96[YRI][hapmap];0.81[AFR][1000 genomes]
rs1861090	0.80[ASN][1000 genomes]
rs2071647	0.86[JPT][hapmap]
rs2098299	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110451	0.80[ASN][1000 genomes]
rs2110452	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2160086	0.86[JPT][hapmap]
rs2160087	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136559	0.86[JPT][hapmap]
rs3136563	0.86[JPT][hapmap]
rs3176773	0.81[JPT][hapmap]
rs3176775	0.86[JPT][hapmap]
rs3176776	0.85[JPT][hapmap]
rs3176787	0.86[JPT][hapmap]
rs3176789	0.86[JPT][hapmap]
rs4763316	0.82[AFR][1000 genomes]
rs7958591	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964603	0.83[AFR][1000 genomes]
rs7972330	0.83[AFR][1000 genomes]
rs7976639	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7978977	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:9928400-9945400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:9930000-9945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:9930200-9945800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr12:9934400-9938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:9934600-9938200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:9934600-9939800	Weak transcription	Primary T cells from cord blood	blood
8	chr12:9934600-9940000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:9935200-9941200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:9935400-9940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:9936000-9941000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr12:9937200-9940600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr12:9937400-9939000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:9937400-9939800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr12:9937600-9941000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr12:9937800-9940000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr12:9937800-9941000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:9938000-9938200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr12:9938000-9938200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:9938000-9938400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr12:9938000-9938800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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