Variant report

Variant	rs10772137
Chromosome Location	chr12:9927654-9927655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9923247..9924749-chr12:9924893..9927763,2	MCF-7	breast:
2	chr12:9925530..9928012-chr12:9928111..9929858,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1029990	0.83[ASN][1000 genomes]
rs1029991	0.83[ASN][1000 genomes]
rs1029992	0.83[ASN][1000 genomes]
rs1029993	0.83[ASN][1000 genomes]
rs1029994	0.83[ASN][1000 genomes]
rs10772127	0.81[ASN][1000 genomes]
rs10772128	0.81[ASN][1000 genomes]
rs10772132	0.83[ASN][1000 genomes]
rs10772138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844737	0.82[ASN][1000 genomes]
rs10844749	0.83[ASN][1000 genomes]
rs10844750	0.83[ASN][1000 genomes]
rs10844769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844790	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11052969	0.80[ASN][1000 genomes]
rs11052970	0.80[ASN][1000 genomes]
rs11052971	0.80[ASN][1000 genomes]
rs11052978	0.80[ASN][1000 genomes]
rs11053043	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12422989	0.80[ASN][1000 genomes]
rs12427030	0.80[ASN][1000 genomes]
rs12427301	0.80[ASN][1000 genomes]
rs12582052	0.83[ASN][1000 genomes]
rs12816871	0.80[ASN][1000 genomes]
rs12824297	0.80[ASN][1000 genomes]
rs1540355	0.83[ASN][1000 genomes]
rs1540356	0.83[ASN][1000 genomes]
rs1861090	0.82[ASN][1000 genomes]
rs2071647	0.86[JPT][hapmap]
rs2098299	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110449	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2110450	0.83[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2110451	0.82[ASN][1000 genomes]
rs2110452	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2160086	0.86[JPT][hapmap]
rs2160087	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3136559	0.86[JPT][hapmap]
rs3136563	0.86[JPT][hapmap]
rs3176773	0.81[GIH][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3176775	0.86[JPT][hapmap]
rs3176776	0.85[JPT][hapmap]
rs3176787	0.81[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs3176789	0.86[JPT][hapmap]
rs35143542	0.80[ASN][1000 genomes]
rs35559880	0.80[ASN][1000 genomes]
rs4385980	0.82[ASN][1000 genomes]
rs4519175	0.82[ASN][1000 genomes]
rs4519176	0.82[ASN][1000 genomes]
rs724666	0.82[ASN][1000 genomes]
rs724667	0.82[ASN][1000 genomes]
rs724668	0.82[ASN][1000 genomes]
rs7295897	0.80[ASN][1000 genomes]
rs7309767	0.80[ASN][1000 genomes]
rs7309875	0.80[ASN][1000 genomes]
rs7488011	0.82[ASN][1000 genomes]
rs7953260	0.80[ASN][1000 genomes]
rs7958251	0.81[ASN][1000 genomes]
rs7958591	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7976639	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978977	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9971740	0.80[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10772137	LOC728715,OVOS,LOC100134040,OVOS2	cis	thalamus	BrainEAC
rs10772137	DCAL1	cis	multi-tissue	Pritchard

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9918600-9932000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:9924400-9930200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr12:9924600-9930600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:9924800-9929200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:9924800-9930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr12:9925200-9930000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:9925200-9930000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr12:9925600-9928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:9925600-9928400	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:9925800-9929400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:9926200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:9926400-9929200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr12:9926800-9929400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr12:9926800-9930200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr12:9927000-9927800	Enhancers	Fetal Thymus	thymus
16	chr12:9927000-9927800	Enhancers	Small Intestine	intestine
17	chr12:9927000-9930200	Enhancers	Primary T cells from cord blood	blood
18	chr12:9927200-9927800	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr12:9927200-9927800	Flanking Active TSS	Dnd41	blood
20	chr12:9927200-9928400	Enhancers	HUVEC	blood vessel
21	chr12:9927200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr12:9927400-9928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr12:9927400-9930000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr12:9927600-9927800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr12:9927600-9927800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr12:9927600-9927800	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr12:9927600-9929600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr12:9927600-9934000	Weak transcription	Thymus	Thymus
29	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell

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