Variant report

Variant	rs12582052
Chromosome Location	chr12:9927570-9927571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9923247..9924749-chr12:9924893..9927763,2	MCF-7	breast:
2	chr12:9925530..9928012-chr12:9928111..9929858,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1029990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029993	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029994	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772127	0.97[ASN][1000 genomes]
rs10772128	0.97[ASN][1000 genomes]
rs10772132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10772137	0.83[ASN][1000 genomes]
rs10772138	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10844737	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844769	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11052969	0.96[ASN][1000 genomes]
rs11052970	0.96[ASN][1000 genomes]
rs11052971	0.96[ASN][1000 genomes]
rs11052978	0.96[ASN][1000 genomes]
rs11053043	0.82[ASN][1000 genomes]
rs12422685	0.95[ASN][1000 genomes]
rs12422688	0.95[ASN][1000 genomes]
rs12422955	0.95[ASN][1000 genomes]
rs12422989	0.96[ASN][1000 genomes]
rs12423545	0.90[AFR][1000 genomes]
rs12425365	0.95[ASN][1000 genomes]
rs12427030	0.96[ASN][1000 genomes]
rs12427278	0.95[ASN][1000 genomes]
rs12427301	0.96[ASN][1000 genomes]
rs12816871	0.96[ASN][1000 genomes]
rs12817268	0.95[ASN][1000 genomes]
rs12819552	0.95[ASN][1000 genomes]
rs12824297	0.96[ASN][1000 genomes]
rs12824308	0.95[ASN][1000 genomes]
rs1540355	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1861090	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2071647	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2098299	0.82[ASN][1000 genomes]
rs2110449	0.91[JPT][hapmap]
rs2110450	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs2110451	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110452	0.83[ASN][1000 genomes]
rs2160086	1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs3136559	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3136563	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs3176773	1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.96[ASN][1000 genomes]
rs3176775	1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs3176776	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs3176787	1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs3176789	0.95[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34779650	0.93[ASN][1000 genomes]
rs35143542	0.96[ASN][1000 genomes]
rs35559880	0.96[ASN][1000 genomes]
rs4385980	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4519175	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4519176	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724666	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724667	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs724668	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7295897	0.96[ASN][1000 genomes]
rs7309767	0.96[ASN][1000 genomes]
rs7309875	0.96[ASN][1000 genomes]
rs7488011	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7953260	0.96[ASN][1000 genomes]
rs7958251	0.97[ASN][1000 genomes]
rs7976639	0.83[ASN][1000 genomes]
rs7978977	0.82[ASN][1000 genomes]
rs9971740	0.96[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs12582052	DCAL1	cis	multi-tissue	Pritchard
rs12582052	TAS2R46	cis	cerebellum	SCAN
rs12582052	CLEC2D	cis	multi-tissue	Pritchard
rs12582052	LEPREL2	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9918600-9932000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:9924400-9930200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr12:9924600-9930600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:9924800-9929200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr12:9924800-9930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr12:9925200-9930000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr12:9925200-9930000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr12:9925400-9927600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:9925600-9928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:9925600-9928400	Enhancers	Primary hematopoietic stem cells	blood
11	chr12:9925800-9929400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:9926200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:9926400-9929200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr12:9926800-9927600	Enhancers	Thymus	Thymus
15	chr12:9926800-9929400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr12:9926800-9930200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr12:9927000-9927600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:9927000-9927600	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr12:9927000-9927600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr12:9927000-9927800	Enhancers	Fetal Thymus	thymus
21	chr12:9927000-9927800	Enhancers	Small Intestine	intestine
22	chr12:9927000-9930200	Enhancers	Primary T cells from cord blood	blood
23	chr12:9927200-9927600	Enhancers	Colonic Mucosa	Colon
24	chr12:9927200-9927600	Enhancers	Esophagus	oesophagus
25	chr12:9927200-9927600	Enhancers	K562	blood
26	chr12:9927200-9927800	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr12:9927200-9927800	Flanking Active TSS	Dnd41	blood
28	chr12:9927200-9928400	Enhancers	HUVEC	blood vessel
29	chr12:9927200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr12:9927400-9927600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr12:9927400-9927600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr12:9927400-9927600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
33	chr12:9927400-9928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr12:9927400-9930000	Enhancers	HUES6 Cell Line	embryonic stem cell

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