Variant report

Variant	rs7978977
Chromosome Location	chr12:9935688-9935689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9911894..9914789-chr12:9934195..9935805,2	K562	blood:
2	chr12:9930340..9931876-chr12:9935375..9937594,2	K562	blood:
3	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1029990	0.82[ASN][1000 genomes]
rs1029991	0.82[ASN][1000 genomes]
rs1029992	0.82[ASN][1000 genomes]
rs1029993	0.82[ASN][1000 genomes]
rs1029994	0.82[ASN][1000 genomes]
rs10772132	0.82[ASN][1000 genomes]
rs10772137	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10772138	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844737	0.81[ASN][1000 genomes]
rs10844749	0.82[ASN][1000 genomes]
rs10844750	0.82[ASN][1000 genomes]
rs10844769	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844790	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11053043	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12582052	0.82[ASN][1000 genomes]
rs1540355	0.82[ASN][1000 genomes]
rs1540356	0.82[ASN][1000 genomes]
rs1861090	0.82[ASN][1000 genomes]
rs2098299	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2110449	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2110450	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2110451	0.82[ASN][1000 genomes]
rs2110452	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2160087	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4385980	0.81[ASN][1000 genomes]
rs4519175	0.81[ASN][1000 genomes]
rs4519176	0.81[ASN][1000 genomes]
rs724666	0.81[ASN][1000 genomes]
rs724667	0.81[ASN][1000 genomes]
rs724668	0.81[ASN][1000 genomes]
rs7488011	0.81[ASN][1000 genomes]
rs7958591	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7976639	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:9928400-9945400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:9929800-9936000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr12:9930000-9945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:9930200-9945800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:9934400-9938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr12:9934600-9937600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:9934600-9938200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:9934600-9939800	Weak transcription	Primary T cells from cord blood	blood
10	chr12:9934600-9940000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr12:9935200-9941200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr12:9935400-9936000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr12:9935400-9936200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr12:9935400-9936600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:9935400-9938000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr12:9935400-9940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:9935600-9937400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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