Variant report

Variant	rs2110450
Chromosome Location	chr12:9937037-9937038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9936591..9939111-chr12:9947051..9948836,2	K562	blood:
2	chr12:9930340..9931876-chr12:9935375..9937594,2	K562	blood:
3	chr12:9912416..9914377-chr12:9936821..9938730,2	K562	blood:
4	chr12:9935876..9938398-chr12:9943768..9945628,3	K562	blood:
5	chr12:9901100..9927208-chr12:9932356..9954328,123	K562	blood:
6	chr12:9936898..9938906-chr12:9943638..9945628,2	K562	blood:

Variant related genes	Relation type
ENSG00000110848	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10772137	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10772138	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844769	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10844790	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11053043	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12301123	0.85[AFR][1000 genomes]
rs12824491	0.91[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs1861090	0.80[ASN][1000 genomes]
rs2071647	0.86[JPT][hapmap]
rs2098299	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110449	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110451	0.80[ASN][1000 genomes]
rs2110452	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2160086	0.86[JPT][hapmap]
rs2160087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3136559	0.86[JPT][hapmap]
rs3136563	0.86[JPT][hapmap]
rs3176773	0.81[JPT][hapmap]
rs3176775	0.86[JPT][hapmap]
rs3176776	0.85[JPT][hapmap]
rs3176787	0.81[CHD][hapmap];0.86[JPT][hapmap]
rs3176789	0.86[JPT][hapmap]
rs4763316	0.84[AFR][1000 genomes]
rs7958591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7964603	0.86[AFR][1000 genomes]
rs7972330	0.86[AFR][1000 genomes]
rs7976639	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7978977	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:9928400-9945400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:9930000-9945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:9930200-9945800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr12:9934400-9938400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:9934600-9937600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:9934600-9938200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:9934600-9939800	Weak transcription	Primary T cells from cord blood	blood
9	chr12:9934600-9940000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr12:9935200-9941200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr12:9935400-9938000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:9935400-9940400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:9935600-9937400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr12:9936000-9941000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr12:9936200-9937200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:9936800-9937200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr12:9936800-9937800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr12:9937000-9937200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr12:9937000-9937600	Active TSS	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links