Variant report

Variant	rs2196187
Chromosome Location	chr19:44850621-44850622
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1011567	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11670157	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11671074	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12151072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12972550	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12981298	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1434575	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1434576	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1897826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014501	0.86[ASN][1000 genomes]
rs2196184	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196186	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2356881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4803697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67711424	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7251134	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7252577	0.85[ASN][1000 genomes]
rs7256402	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs733265	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8104642	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9676368	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs984117	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912110	chr19:44840789-44902190	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv963093	chr19:44850276-44876742	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:44837400-44851000	ZNF genes & repeats	Ovary	ovary
4	chr19:44840800-44860000	Weak transcription	NHDF-Ad	bronchial
5	chr19:44844200-44859600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:44844200-44859800	Weak transcription	Osteobl	bone
7	chr19:44844800-44851000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr19:44844800-44853000	Weak transcription	HSMMtube	muscle
9	chr19:44845000-44860000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:44845200-44860000	Weak transcription	HSMM	muscle
11	chr19:44845400-44859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr19:44847000-44853200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:44847400-44851400	ZNF genes & repeats	Aorta	Aorta
14	chr19:44847400-44855200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:44847800-44855400	Weak transcription	Right Ventricle	heart
16	chr19:44848000-44851800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr19:44848200-44852200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr19:44848200-44853400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:44848200-44854800	Weak transcription	Fetal Brain Male	brain
20	chr19:44848600-44851000	Enhancers	Brain Anterior Caudate	brain
21	chr19:44849000-44851000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr19:44849000-44851400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr19:44849000-44852200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr19:44849000-44852800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr19:44849200-44851000	Enhancers	Brain Germinal Matrix	brain
26	chr19:44849600-44859800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr19:44850000-44853400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr19:44850400-44850800	Weak transcription	A549	lung
29	chr19:44850400-44851400	Weak transcription	Esophagus	oesophagus
30	chr19:44850400-44851600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr19:44850400-44851600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr19:44850400-44860000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr19:44850400-44860200	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links